Gene SERP0917 details

Gene Information

• Locus tag: SERP0917
• Symbol: sbcD
• ID: 3241519
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: +
• Start bp: 925453
• End bp: 926577
• Gene Length: 1125 bp
• Protein Length: 374 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 637167573
• Product: exonuclease SbcD
• Protein accession: YP_188496
• Protein GI: 57866846
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0420] DNA repair exonuclease
• TIGRFAM ID: [TIGR00619] exonuclease SbcD

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0424463
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTG TACATACCGC TGATTGGCAT CTGGGTAAAA TTTTAAATGG AAAACAATTG 
CTTGAAGATC AAAAATATAT TTTAACTCAG TTTAAACAAC ATATGGAGAA AGAACAGCCA 
GATTTAATAG TAATTGCAGG TGATTTGTAT GATACCTCAT ATCCAAGTAA AGAAGCGATA 
GGTTTACTTG AAGAGACTAT TGAATACCTA AATATAGAAC TTAAAATTCC AATAATCATG 
ATAAGCGGTA ACCATGATGG TAGGGAGAGA TTGAATTATG GCTCTAAATG GTTTGAGAAT 
AATCAACTTT ACATAAGAAC TCAACTAGAA AATATTGATG ATCCAATAGA ATTGAGTGGT 
GTTCAATTTT TCACTTTACC TTTCGCAACT GTGAGTGAAG TACAAAATTA TTTTAAGGAT 
AAGCAAATAG AAACATATCA ACAAGCATTA AACGAATGCT TAGAGCAAAT GTCTAGTTCC 
ATAGATAATA ATAAGGTGAA TATATTAATT GGTCATTTAA CTATTGAGGG CGGTAAAACT 
TCAGATTCGG AAAGACCATT AACTATTGGA ACAGTAGAAT CAGTTGATAT GCATTCTTTT 
CGGTTGTTTG ATTATGTAAT GCTCGGGCAC CTACATCATC CATTTAGTAT AAATAACTCT 
TTTATCAAAT ATAGCGGTTC GATTTTGCAA TACTCTTTCT CTGAAGTAAA TCAATCTAAA 
GGATATAGAG TTCTTGATAT TGAAAACAAC CAACTATTAA ATGAAACCTT CGTTCCTTTA 
AAACCTCTAA GAGAACTAGA AGTTATTGAA GGTGATTATG AGGATATTAT TCAAGAAAGA 
ATTAAAGTAA AAAATAAAAA TAATTATTTT CATTTTAAGT TAACGAATGT TTCTCATATT 
ACTGATCCAA TGATGAAACT GAAACAAATT TATCCCAATA TATTAGCACT ATCGAATGTA 
GTATTTGATC ATAGTGAGAA TTTTAGCCAT GTTGAAATCA AAAAACAAGA TGATCAGACA 
ATTATAGAAA ATTTTTATAA AAATATGACA GATCAACATC TGAGTCAAGT TCAATCAGAC 
AAAATAAAGC ACTTGTTAAG TTTTATATTG GATAGGGAGG GGTAA 

 

Protein sequence

MKIVHTADWH LGKILNGKQL LEDQKYILTQ FKQHMEKEQP DLIVIAGDLY DTSYPSKEAI 
GLLEETIEYL NIELKIPIIM ISGNHDGRER LNYGSKWFEN NQLYIRTQLE NIDDPIELSG 
VQFFTLPFAT VSEVQNYFKD KQIETYQQAL NECLEQMSSS IDNNKVNILI GHLTIEGGKT 
SDSERPLTIG TVESVDMHSF RLFDYVMLGH LHHPFSINNS FIKYSGSILQ YSFSEVNQSK 
GYRVLDIENN QLLNETFVPL KPLRELEVIE GDYEDIIQER IKVKNKNNYF HFKLTNVSHI 
TDPMMKLKQI YPNILALSNV VFDHSENFSH VEIKKQDDQT IIENFYKNMT DQHLSQVQSD 
KIKHLLSFIL DREG