| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2731 |
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| Symbol | |
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| ID | 2740950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 2787512 |
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| End bp | 2788513 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637161628 |
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| Product | NifR3 family TIM-barrel protein |
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| Protein accession | NP_973329 |
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| Protein GI | 42528231 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00411092 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGCTTTACA AGCCCGTCTC AATAGGCGGG CTTCTTTTAT CGGGGAACAT CTTTTTAGCC
CCTGTTGCAG GCTACTCCGA CAAGGCATTC CGTTCCATCT GCGTGGACTG CGGTGCGGAT
TTTACATACA CCGAAATGGT ATCCTCGGAA GCCCTCGTGA GGGATTCCGA TAAAACCGAA
AGCCTCATAG GAAGGGCACC TAACGAAAAA GCTTATGCCG TACAGATTTT CGGCTCAAAC
CCCGAATACA TGGCAAAAAC CGCCGTCATA ATCGCCGAAA AATATTCCCC CGAATGTATC
GACATAAATT CGGGCTGCCC CATGGCAAAG ATTACCAAAA ACGGCGCCGG ATCAGCCCTG
ATGACAGACA TTCCTCTTTT GTACAGGATT GTAAAGGCAG TAAACGATGC TATGGCCCCT
TATAAGATAC CCGTAACCCT TAAAATACGC TCAGGCTTTA CCGCCGACAA ACTTAACTGG
AAAGAAGCAG CCTCAGCCGC CATAGATGCC GGGGTTAAAA TGCTTACTCT CCATCCCCGT
ACCCGCTCGC AGGTGTATTC AGGCAAGGCC GATTGGAACA TCCTTGCAGA GCTGGTTCAA
TTTGCAAAGC CTTATCAAAT TCCGATTTTC GGATCGGGAG ATTTATTTTC ACCTGAGGAT
GCAAAAAAAA TGCTTGAAGA AACAGGCTGT GCCGGCATAA TGTTTGCCCG CGGTGCTATG
GGAAACCCCT TTATTTTTAC CCAAACAAGG GAGCTTTTGA CCAATGGAAC ATACGGCGAA
ATAAGCACGG AACAAAAAAT CCGCACCGGT TTTAAAGAAC TCATCTTTTT ATGCGATGAA
AAGGGAGAAG AAAAAGGCTG CCGCGAAATG CGTAAACGCT TTGCCGCCTA CACCAAGGGC
ATACCCGACG GCTCCCGCCT CCGCCAAGAA TTGGTACAAG CCTCAACAAT AGCGGAGTAT
AAAGCTATAA TTCAAAGTGC TTTTAATATT TCTTGCTTTT AA
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| Protein sequence | MLYKPVSIGG LLLSGNIFLA PVAGYSDKAF RSICVDCGAD FTYTEMVSSE ALVRDSDKTE
SLIGRAPNEK AYAVQIFGSN PEYMAKTAVI IAEKYSPECI DINSGCPMAK ITKNGAGSAL
MTDIPLLYRI VKAVNDAMAP YKIPVTLKIR SGFTADKLNW KEAASAAIDA GVKMLTLHPR
TRSQVYSGKA DWNILAELVQ FAKPYQIPIF GSGDLFSPED AKKMLEETGC AGIMFARGAM
GNPFIFTQTR ELLTNGTYGE ISTEQKIRTG FKELIFLCDE KGEEKGCREM RKRFAAYTKG
IPDGSRLRQE LVQASTIAEY KAIIQSAFNI SCF
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