| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2659 |
|---|
| Symbol | |
|---|
| ID | 2741104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2695990 |
|---|
| End bp | 2697243 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637161556 |
|---|
| Product | GAF domain/HD domain-containing protein |
|---|
| Protein accession | NP_973257 |
|---|
| Protein GI | 42528159 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAA AAAATAAATA TAAAGAACTG TCAAAGGAAC AGATTCTAAT CAAAATACTT
GAAACGGAAT CTTTGATACA CAGTGTTCAA GACGTTGATG TTCTTTTAGA GCAAATACTT
ACCGAAGCCC GGAGTGTTGT AAATGCCGAC GCCGGTTCAA TATATATAGC TGAAGGGGAC
AGGCTTGCCA TAAGGTACGC CCAGAACGAC ACCCTTCAAA AAAAACGTCC GGCAGGAACA
AAACTTCCTT ATATCTTTTT TGATTTTCCT ATAGATAATT ATACAATAGC CGGATATGCC
GCAAATACAA AAAAACTTAT AAATATTCCG GATGTTTACA ATATCGATGC CGATAAGCCT
TTTAAGTTCG GTAAAGCTAC GGATGAAAAA ACAGGCTATA AGACCGTTTC CAATTTAACC
ATTCCCATTC TTTCTATGTC GGGAATGCTC TTGGGAGTCC TTCAAGTCTT AAATGCTCTT
GATAAATACG GCAAACCGAA AACCTTTTCC CATGATGATG AAATTTATCT AAGTCATTTT
GCTTCAAATG CGGGAATTGC TCTTGAACAT GCTTTTGTAA CAAGGGCGAT GGTTATGCGT
ATGATCAAAA CGGCTGAACT ACGCGATCCG AGAGAAACAG GAATGCATGT AAACAGGGTT
GCAAATTATT CCGTTGAAAT TTATGATAGG TGGGCATTTA ATAACGGCAT TCCTATGGCC
GAACAAACAA AATACCGTGA CTCTCTAAAA ATTGCATCGA TGCTTCATGA TATTGGAAAA
GTTGCAATTT CGGATCTGAT TTTAAAAAAG GCCGGAAAAT TAACCGACGA AGAATTCTCG
GTTATGAAAA CCCATACATG GCTGGGAGCC CGTTTGTTTA GTGGAAATGA TTCCCCTCTT
GATAAACTCT CAATGGAAAT AGCTTTGCGG CATCACGAAA ACTGGGACGG GACAGGCTAC
CCGGGACATA TTGATATAGA AACGGGAGAA GCCCTAAAAA CGGATAAAAA AACAGGATGT
CCGCAAGGAC TTAAAGGAGA AGAAATTCCT CTCGGCGCAA GAATTGTTGC AATAGCCGAC
GTCTACGACG CCCTTTCTTC AAAGCGTTCC TATAAAGACT CATGGACCGA AGAAGACATA
CTTAAAGAAT TAAAAAAAAT GAGCGGAAAG AAATTTGATC CGGAAATAGC AAAAGCCTTT
TTTGAAGTGC TTGACAGAAT CCAAGCAATT AAGGCCCATC TTGCAGATGA GTAG
|
|---|
| Protein sequence | MTEKNKYKEL SKEQILIKIL ETESLIHSVQ DVDVLLEQIL TEARSVVNAD AGSIYIAEGD
RLAIRYAQND TLQKKRPAGT KLPYIFFDFP IDNYTIAGYA ANTKKLINIP DVYNIDADKP
FKFGKATDEK TGYKTVSNLT IPILSMSGML LGVLQVLNAL DKYGKPKTFS HDDEIYLSHF
ASNAGIALEH AFVTRAMVMR MIKTAELRDP RETGMHVNRV ANYSVEIYDR WAFNNGIPMA
EQTKYRDSLK IASMLHDIGK VAISDLILKK AGKLTDEEFS VMKTHTWLGA RLFSGNDSPL
DKLSMEIALR HHENWDGTGY PGHIDIETGE ALKTDKKTGC PQGLKGEEIP LGARIVAIAD
VYDALSSKRS YKDSWTEEDI LKELKKMSGK KFDPEIAKAF FEVLDRIQAI KAHLADE
|
|---|
| |