Gene TDE2534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2534 
Symbolnth 
ID2739046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp2560284 
End bp2560916 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content41% 
IMG OID637161427 
Productendonuclease III 
Protein accessionNP_973132 
Protein GI42528034 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0635036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAT TGGATAAAGA TAAAATCGAA GAAGTATACC GCCGCTTTAA AAAAAATAAC 
CCTAACCCGA AAGGAGAATT ACATTCTGCA AATATTTTTA CCCTTTTGGT AGCGGTGGTA 
CTGTCTGCAC AAGCGACTGA TGTCGGTGTA AATAAAGCAA CGGGGCCTTT TTTTAAGGCA 
GCCGATACGC CTCAAAAAAT GATAGAACTG GGTGAAGAAG GAATCCGCGA ATACATTAAA 
ACAATAAATT TATATCCGAC AAAGGCTAAA CGTATTTTTG AATTAAGCCG AATAATCCAA 
AACGAGTATT CAGGAATGGT TCCCGACAGC ATGGAAGAAC TTATAAAACT TCCCGGGGTC 
GGCCGCAAAA CCGCAAACGT GGTTTTAAAC ATGGGCTTCG GAAAACCTGC AATCGCAGTT 
GATACCCATA TCCTGCGCAC CGCCCCGCGT ATCGGTCTTT CATTGGGCAA GACTCCGATT 
CAAGTTGAAG AAGATTTACT TAAAGTTACT CCAAAAAAAT ATTTACTAAA TGCCCACCAC 
TGGATTCTCC TGCATGGGCG CTATATCTGC AAGGCCAGGA AACCGGAATG TGAAACCTGT 
TTTTTATCCG ATATCTGTAT GAAGAATTTA TAA
 
Protein sequence
MNLLDKDKIE EVYRRFKKNN PNPKGELHSA NIFTLLVAVV LSAQATDVGV NKATGPFFKA 
ADTPQKMIEL GEEGIREYIK TINLYPTKAK RIFELSRIIQ NEYSGMVPDS MEELIKLPGV 
GRKTANVVLN MGFGKPAIAV DTHILRTAPR IGLSLGKTPI QVEEDLLKVT PKKYLLNAHH 
WILLHGRYIC KARKPECETC FLSDICMKNL