Gene TDE2365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2365 
Symbol 
ID2739974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp2399020 
End bp2400039 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content35% 
IMG OID637161256 
Producthigh-affinity branched-chain amino acid ABC transporter, permease protein 
Protein accessionNP_972964 
Protein GI42527866 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.554509 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAAA AATCGATTAT CTTAGATAAA ATGATTAAAA AAATCGCTAA AAATCAGATA 
TTTGTTTTAA TTATACTTGC TGTTCTGGCA ATATCTTTCC CGATTTTTGT TGACAATAAT 
TACTATCTTG GCATAGCAAT AATGTTCTTT ATATATTCAA TATTGACCTT ATCTCTTAAT 
TTAGTTACGG GTTATGTTGG ATTTACACTT TTGGGACAAG CGGCTTTTTT CGGTTTGGGG 
GCTTATGTTG CTGCAATACT TGGAACGCGT TTTCAAGTTG ATTTTATTAT CGGATGTATA 
GCAGCCTCTT TATTTGCTGG TATTTTTGGA GCAATGCTGG CTCTCCCGAC TTTGCGCATA 
CGCGGCCGAT ATTTTGCAAT TGTAACTCTA GGTTTTTCTG AAATCATGCG AATGATAGAG 
CTTAACTGGA TGGAGATGAC GCGAGGCCCT CAGGGAATTT CAAGGATACC GGGTATAGTA 
ATTTTTGGGA AAGAGTTTGA CTCATACAGA TTTAAGTACT ATGTTGGGCT GGTTCTTTTA 
ATATTTGCCT TATATATAAT TAATTCAATT TTAAATTCAA AACATGGGCG TGCCGTACGC 
GCAATAAAAG ATGACGATTT AGCTGCCGGA GCTATTGGAG TAAATGTTTA TAAATATACC 
GTTATTATAT TTTCTATTTC AGCGGGTATT GCAGGAATGG CCGGAGCCTA TTACGCTCAT 
TATATGAGTT TTATTGATCC TAATGCTTTT AATTTTGAAC AATCAATTTT AATTTTATCG 
ATGGCCATAT TTGGCGGATT GGGAAGTTTG CCCGGAAGTA TTTTAGGAGC TCTGGCATTG 
ACTATTTTAC CTGAAGCCCT CAGATTTTTA TCCGATTATC GGCAAATTAT ATATGGTCTT 
ATATTGGTTT TGATAGTTAT ATTTAAACCC TCAGGTGTTA TGGGTAAGAT AAATTTTGAA 
CGGATACGAT CTATAGCAAA TATGGAAAAG GAGGACTTAA ATGTCGAATC CAATTCTTAA
 
Protein sequence
MRKKSIILDK MIKKIAKNQI FVLIILAVLA ISFPIFVDNN YYLGIAIMFF IYSILTLSLN 
LVTGYVGFTL LGQAAFFGLG AYVAAILGTR FQVDFIIGCI AASLFAGIFG AMLALPTLRI 
RGRYFAIVTL GFSEIMRMIE LNWMEMTRGP QGISRIPGIV IFGKEFDSYR FKYYVGLVLL 
IFALYIINSI LNSKHGRAVR AIKDDDLAAG AIGVNVYKYT VIIFSISAGI AGMAGAYYAH 
YMSFIDPNAF NFEQSILILS MAIFGGLGSL PGSILGALAL TILPEALRFL SDYRQIIYGL 
ILVLIVIFKP SGVMGKINFE RIRSIANMEK EDLNVESNS