| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2309 |
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| Symbol | |
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| ID | 2740274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 2346648 |
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| End bp | 2348189 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637161200 |
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| Product | sigma-54 dependent transcriptional regulator, putative |
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| Protein accession | NP_972909 |
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| Protein GI | 42527811 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00141019 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGG CTATATCCGT TTTAAATAAA ACAAATCCCA TCTCGGCCGA GCAGGCATTG
GAGCTTATTC TTGAGGCTTT AAGAGAACTG GTCGATTACG AGCTTGCCGT TGTGATGGGC
TTTGAAGATA AAAATGTTCT AAAGGTAAGA AAGGCCATAG GCCCGCTTTC TTCAAAATTA
TTGGACGATT TTACGATTAA CTTAAACAAA CGGAAAGACA TTGCCCGAAT TTTAGATGAA
AGAAAGGCTT TTTTGTTTGA TGAAAATATT CCCCACGTCG ATACCTATGA CGAAATAATG
AAGCTGCCCG AAAATCATTC TTGTTTGGTG GCTCCCCTTT ACATAGGAGA CAAGGCTATC
GGAATGATGA CCTTGGATCA CAGTATGTGT TCCCGCTTTA CGCCTGAAAT CGTCCGTTTT
ATATCTACAA TTTCAAAACT TATTTCGGTT GCCTTGGTCC AAACGGATGC ATCCCAATCC
CTCATTCAAA AAACCGAAAG CCTCCTTCTC GAAAGAAATG TTTTGCTCAC CGCTTCGACA
AATGTTTTTA AGGATATGGT CGGTTCTTCC CGGGCTTGGA CTACGGTTTT AGATTCGATA
AAGCTGGTTG CGGCCTCTGA TGTGCCGGTT TTAATTTCGG GAGAAACGGG AACGGGAAAA
GAACAGGCAG CCCGCACCAT TCACAGGCTT TCCAACAGGG CCGAAAAACC CTTTGTGCCC
GTAAACTGTT CTGCCCTTGT GCAGAGCCTT GCCGAAAGTG AAATCTTCGG GCATGAGAAA
GGCGCCTTTT CGGGGGCTGC GGCCTTGCGG AAGGGACGGT TTGAACTTGC CGATGGCGGC
ACCCTCTTTT TGGACGAAGT GGGGGACTTG CCCTTTGATT TACAGCCCAA ACTTTTGCGT
GTTCTTCAAG ACGGAAAATT CGAGCGTGTC GGCGGGGAAA AACCCGTTTC TGTGGATGTG
CGCATAATAG CCGCAACCAA TGTCGATTTG GCCGAGGCCG TTTCGATGGG ACGCTTCCGT
GAAGACCTGC TTTACAGGCT GGATGTTTTC CCGCTAAGGC TTCCGCCTTT GAGGGAACGC
GATGACGATA CGGCTCTTTT AGCCGAACAT TTTATTTCGG ATATACGCAA ACGGAAGGGC
TTTGAAAACA CGAGCCTTTC GATGGCTGCA ATCGAAAAAC TTATGTCTAT GCCTTGGCAT
GGAAATGTCC GCGAGCTTAA AAACGTTGTA GAGCGGGCTG CAATTCTTTC GCAAGGCGGA
GAAATCCCTG CCGAGCACTT GGTGCCGGGA ACAAGAGAAT TCTATATTTC AAACGCTGCT
AAAAAAAAGC CCCTAAAGCC TGCCGTAAAT AAGGAGACTG AAAAAGATAA GGTTTTGCCT
GAAGATATTA AACCCTTTGA TGAGGCTCAA ACCGAGATTA TTCAAAAAGC TCTTTTAGCC
TCAAACGGAA AAATTTACGG CAAAGACGGA GCTGCCGCTC TTTTAAACTT AAAACCGGGA
ACCCTTCAAA GTAAGATGAA AAAACTGGGC ATTAAGTACT AA
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| Protein sequence | MNKAISVLNK TNPISAEQAL ELILEALREL VDYELAVVMG FEDKNVLKVR KAIGPLSSKL
LDDFTINLNK RKDIARILDE RKAFLFDENI PHVDTYDEIM KLPENHSCLV APLYIGDKAI
GMMTLDHSMC SRFTPEIVRF ISTISKLISV ALVQTDASQS LIQKTESLLL ERNVLLTAST
NVFKDMVGSS RAWTTVLDSI KLVAASDVPV LISGETGTGK EQAARTIHRL SNRAEKPFVP
VNCSALVQSL AESEIFGHEK GAFSGAAALR KGRFELADGG TLFLDEVGDL PFDLQPKLLR
VLQDGKFERV GGEKPVSVDV RIIAATNVDL AEAVSMGRFR EDLLYRLDVF PLRLPPLRER
DDDTALLAEH FISDIRKRKG FENTSLSMAA IEKLMSMPWH GNVRELKNVV ERAAILSQGG
EIPAEHLVPG TREFYISNAA KKKPLKPAVN KETEKDKVLP EDIKPFDEAQ TEIIQKALLA
SNGKIYGKDG AAALLNLKPG TLQSKMKKLG IKY
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