| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2275 |
|---|
| Symbol | truA |
|---|
| ID | 2740025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2311216 |
|---|
| End bp | 2312022 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637161164 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | NP_972875 |
|---|
| Protein GI | 42527777 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0551657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCT CCCAAAATCA AAAAAACATA CTCCTTACCA TTTCCTATGA CGGTACGAAT
TTTTGCGGAT GGCAAAAACA AACCAAGGAA GGAGCTGAAA CCTTCCGGAC GGTTCAAGGA
GAATTGGAAA AAGCCTTAAC CAAAATTCAT AAACATCCTA TAGAAACAAA CGGCTCAGGC
CGTACGGATT CAGGTGTACA CGCAGCCCGC CAGGCCGTAA ACTTTTTTTG CGATATAAAA
AGCATGAGGG CCTCAAATTT TTTACCGGCA CTTAACTCAA TCCTGCCTAA GGATATAAGG
GTGATGGATG CAGCTGAAGT GTCCCCCCTC CTGCATGCAC GCTTTAATGC TCTTTCAAGA
ACCTACCGCT ATAAGATCAA ATGCGGCAAA ACAATCTTCG CCCACGAGCA GCCCTATACT
TGGCACATAA GAAGATACCC CGACATAGCC GCCTTAAACG AAATGGCCTC CTGCCTTTCA
GGAGAATTGG ATTGTACCGC TTTTTCTGCA GCCGGAGATC AAAGTATAAG TAAATCCCGC
TATATCAAAA AAGCAGTTTT TTTTATCGAA AACGATTATC TTATTTTTGA AATTTGTGCA
AATGCCTTTT TATGGAAGAT GGTACGCTCA ATAGTAGGAA CTCTTTTGCA TTTAGACGAA
ATCGGAGCTT CCAAAAAAGA TTTTAAAGAT ATCTTAGAAT CAAAGATGAG GGAAAAGGCA
GGCCCCACAG CACCGCCCCA AGGCCTTTTT TTATGGTCGA TAGAATATCC TGAAGACCTG
CTTAAAGCAC CGCCGGAAAC CTTTTAA
|
|---|
| Protein sequence | MEISQNQKNI LLTISYDGTN FCGWQKQTKE GAETFRTVQG ELEKALTKIH KHPIETNGSG
RTDSGVHAAR QAVNFFCDIK SMRASNFLPA LNSILPKDIR VMDAAEVSPL LHARFNALSR
TYRYKIKCGK TIFAHEQPYT WHIRRYPDIA ALNEMASCLS GELDCTAFSA AGDQSISKSR
YIKKAVFFIE NDYLIFEICA NAFLWKMVRS IVGTLLHLDE IGASKKDFKD ILESKMREKA
GPTAPPQGLF LWSIEYPEDL LKAPPETF
|
|---|
| |