Gene TDE1963 details

Gene Information

• Locus tag: TDE1963
• Symbol: selB
• ID: 2741526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1975429
• End bp: 1977201
• Gene Length: 1773 bp
• Protein Length: 590 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637160853
• Product: selenocysteine-specific translation elongation factor
• Protein accession: NP_972566
• Protein GI: 42527468
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.387563
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTATA TTTTGGGAAC AGCGGGACAT GTAGACCACG GAAAGACTGC CTTGGTAAAA 
AGGCTTACAG GAATTGAAAC CAGTCATCTG CCTGAAGAAA AAAAGCGGGG GATGACCATA 
GAGCTCGGCT TTGCTTCGCT TGAAGATCCT GTTCACGGTA CTGTCGGCAT AGTAGATGTT 
CCCGGCCATG AACGCTTTAT CCGCAACATG GTTGCAGGCA CATGGGGTTT GGATGCGGCT 
CTTTTAATAG TGGCAGCCGA TGACGGCTGG ATGCAGATGT CCTCCGATCA TTTGCGTGTA 
CTAAAGGCCA TGAAGATAGA ATCCATTCTT CTTGTAATCA CAAAATCGGA CCTTGCAGAA 
AAGGACATGC TTGAACTTCT AATCGAAGAT GCCAATGCCC AATGCGAAAA AATAATCGGA 
AGGAAACTCC CTGCCGTTGC CGTTTCTTCC CTTACCGGAA GCGGCATCGA GGAACTCAAA 
GCCGAAATTA CAAAACTTCT TTCTTCATCA AAAAAACAAA ACCCGCCTAC TCCCTTTTTA 
TATGTAGACA GGGTCTTTGT CCTAAAAGGC ATAGGAACCA CCGTTACGGG AACATTAAGA 
GGAAAAGGTC TTCACACCGG AGACAGCCTA CAGATATATC CTTCAAATGA AGAATGTAGA 
ATTAAATCGA TACAAAACCA TCATAAGGAT GTTGAAAAAA TAGAGCCCGG CACGCGGACA 
GCCCTCAACT TAAAACTGGG AGAAAAAACA AATCTTGAAA GAGGAATGCT CTTAGCGGAA 
AAAGATTCAA ATTTTGTTTT AAGCGGAAAA GAACTTTTAG TACGCATCGA TGAAGTTTTT 
ACAAACAAGG AAGGGGGCTT TAAGAATCAT GCCGAAATAG AAATAGCCCT CGGAAGTGCC 
CATGCAATAG GCAGCATTCA CTTAAACCAA TTCGACAGGA GCTTGGGCCG TCTTTCTTTG 
GAAGAGCCCG TTGCCTCTGC CTGGAATCAA AGAGCCGTTT TAATAAGGCA CGGCGGAAGC 
GAAATTCTAG CCTCGGCCAG AGTGCTCGCA AGTTTTCCAA GCTATAAAAG AATACAGTTT 
AAGGAAGCCT TTGAGGTTTA CAGGGATAAG GAACTTCCTT CAATTCACAG CTACAAGTTT 
AATATTGAAG GCTTTGTCGA GGATACTAAA ATCAAAACTC AAGAGCTCAC ATCGGATAAA 
AATGAAGTCA TCGAGTATGG CTCTTGGCGT TTTTTAAAAA AGCGGCTTGA GTTTTGGGAA 
AATAAAATTT TAAAAACGGC TCAAGAAAGT CAGGCAGGTT TTACCCTTGA AGAAGTGGAC 
TTACCTGTTC CGCAAAGGGT AAAAACTACA GTATTAAAAA AACTTTGCGA TGAAAAAAAA 
CTGGAAAAAG AAGCTCATGT TTATAAACTG AGCGGAAGAA CGGGCGACGA TATTTCTAAA 
AATGCAAAGG CCCTTTTGGA TGCAGCCTTT AAGGCGGGTT TTGAAGGCAT CGAAATAGAC 
AAGATAAAGC TCCCTCAAGC CCGAAAAGAA GCCAGAGACC TGATAAAATT AGGTAAGCTG 
ATCTGCCTTG AAAACTTTTT ACACTACCAT ACGGATTTTT ACAAAAAGGC CGTAAATTCA 
TTATTTGCAA AATACAAAAC AGGGGATAAG ATTTCGATAG CCGATGCACG GGAGGTAACC 
GGCCTTTCCC GCAAATACAT TCTTCCGATT CTTAACCTTC TCGAAAAAGA AGGCAAGCTA 
AAAAGGCAAG ACAACGACAG AATTGTATTG TAA 

 

Protein sequence

MPYILGTAGH VDHGKTALVK RLTGIETSHL PEEKKRGMTI ELGFASLEDP VHGTVGIVDV 
PGHERFIRNM VAGTWGLDAA LLIVAADDGW MQMSSDHLRV LKAMKIESIL LVITKSDLAE 
KDMLELLIED ANAQCEKIIG RKLPAVAVSS LTGSGIEELK AEITKLLSSS KKQNPPTPFL 
YVDRVFVLKG IGTTVTGTLR GKGLHTGDSL QIYPSNEECR IKSIQNHHKD VEKIEPGTRT 
ALNLKLGEKT NLERGMLLAE KDSNFVLSGK ELLVRIDEVF TNKEGGFKNH AEIEIALGSA 
HAIGSIHLNQ FDRSLGRLSL EEPVASAWNQ RAVLIRHGGS EILASARVLA SFPSYKRIQF 
KEAFEVYRDK ELPSIHSYKF NIEGFVEDTK IKTQELTSDK NEVIEYGSWR FLKKRLEFWE 
NKILKTAQES QAGFTLEEVD LPVPQRVKTT VLKKLCDEKK LEKEAHVYKL SGRTGDDISK 
NAKALLDAAF KAGFEGIEID KIKLPQARKE ARDLIKLGKL ICLENFLHYH TDFYKKAVNS 
LFAKYKTGDK ISIADAREVT GLSRKYILPI LNLLEKEGKL KRQDNDRIVL