Gene TDE1887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1887 
Symbol 
ID2739116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1908582 
End bp1909223 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content39% 
IMG OID637160773 
ProductTPR domain-containing protein 
Protein accessionNP_972490 
Protein GI42527392 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000139427 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAAGATA AAAAAACAAA AATTAATTTT ATCTTTAAAT TTACTCTTGT TTTTTTTATG 
CTGTGTTGGG CTCCTCTTTT TTCTCAAAAT AAGCCTGATG CTCTGGTCTT GTATAAGAAC 
GGCCGCTATG CCGAAGCTAT TGCCGTCTGT GAGGCCGAAA TTAAGCAGTC TCCCAATAAT 
TTGGACAGTT ATGTTGTAAT GACATGGGCT CTCTTGGCTG ACGGACAATA CCAAAAAACC 
TATGATATGG CCTTAGCCGG ACGTAAAATT GCACAAACCG ATCCTCGTCT TATAGCAACT 
CAGGCTGAGG CCTGTTATTA TTTGGGTAAA AATTCCGAAG CCCTTAAACT TTTTCAAGAT 
TATATTTCTT ATGCTCCCAA TGGAGTGCGT ATTTCTTCTT CCTATTATTT TATGGGAGAA 
ATATATTTGA GAATGGCAAA GTACAGGCAT GCCGACATTT CTTTTTCCGT AGCCGTAACC 
CTTGATTCCT TTAACAGTCT TTGGTGGGTT CGTTTAGGCT ATGCCAGAGA GCAGATAAAA 
GAATACCGTT ATTCCCTTGA AGCCTACAAT AAGGCCTTGA GCTTAAACAA AAACCTTGTT 
GATGCTCAAA AGGGGCGTGA AAGGGTTCTG CAGCGTTTTT AA
 
Protein sequence
MEDKKTKINF IFKFTLVFFM LCWAPLFSQN KPDALVLYKN GRYAEAIAVC EAEIKQSPNN 
LDSYVVMTWA LLADGQYQKT YDMALAGRKI AQTDPRLIAT QAEACYYLGK NSEALKLFQD 
YISYAPNGVR ISSSYYFMGE IYLRMAKYRH ADISFSVAVT LDSFNSLWWV RLGYAREQIK 
EYRYSLEAYN KALSLNKNLV DAQKGRERVL QRF