Gene TDE1681 details

Gene Information

• Locus tag: TDE1681
• Symbol: atpD
• ID: 2740136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 1733013
• End bp: 1733627
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637160564
• Product: V-type ATP synthase subunit D
• Protein accession: NP_972285
• Protein GI: 42527187
• COG category: [C] Energy production and conversion
• COG ID: [COG1394] Archaeal/vacuolar-type H+-ATPase subunit D
• TIGRFAM ID: [TIGR00309] H(+)-transporting ATP synthase, vacuolar type, subunit D

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00355513
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATAA AACTGACAAA AAATGAGCTG AAGAATCAAA AAGAATCTTT AAAAATGTAT 
AGAAGATACT TGCCGACTCT TCAACTCAAA AAACAGCAGC TTCAAACCGA AATCCGCACC 
ATCGAAGCCA GGGCTAAAGA AGTAAGGCTT CACAGAGATG CCCTTCATCG CGAATTCGAA 
GACTGGGTAG CGGTATTCGG CGAGCAAAAT GTTTTTCACC CCTCGATGGT TAAGATAAAA 
GAACTTTTAA CTTCAACCGG AAATATTGCG GGAGTGAGTA TCCCTGTTTT TTCAGGTGCG 
GAATTTGAAC GCTCTAAATA TGATCTTTAT AAGACTCCTC TTTGGGTTGA TACGGCTGCC 
GAAAAATTGC AGGAAGTTTT GAGCTTAGAC CTTGAGGCAA AGGTGCTTGA CGAACAAGTC 
CGCCTATTGA ATTCCGAGCT TAGAACGACC ACTCAGCGCG TAAACCTCTT TGAAAAGGTT 
AAGATACCCG AAACTAGGGC AAACATAAAA AAGATTACGG TTTATTTGGG AGATCAGCAG 
GTTGCAGCTG TTGTTCGCGG TAAGATTTCA AAAAAGAACC TTGAAAAGGT TCATCATAAG 
GATGAAGCTC TATGA 

 

Protein sequence

MAIKLTKNEL KNQKESLKMY RRYLPTLQLK KQQLQTEIRT IEARAKEVRL HRDALHREFE 
DWVAVFGEQN VFHPSMVKIK ELLTSTGNIA GVSIPVFSGA EFERSKYDLY KTPLWVDTAA 
EKLQEVLSLD LEAKVLDEQV RLLNSELRTT TQRVNLFEKV KIPETRANIK KITVYLGDQQ 
VAAVVRGKIS KKNLEKVHHK DEAL