| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1604 |
|---|
| Symbol | |
|---|
| ID | 2740845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1654937 |
|---|
| End bp | 1655623 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637160486 |
|---|
| Product | ABC transporter, permease protein, putative |
|---|
| Protein accession | NP_972210 |
|---|
| Protein GI | 42527112 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0619] ABC-type cobalt transport system, permease component CbiQ and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGG CAAGAAACAC TCAAGGATGG TCAATGAATC CGATAACGCT TTTTATACTT
ATATTGCTCA CATCATTCTT GGTGTTTCTT GTCAATCAGA CCATGTATTA TGTGCTGCTC
GGAATGAGCT TTCTTTTTTT GTTCTTATTT TCGTACACGG AAGGCGTAAA AAGGGCTTTG
GCCTACATCG GCCTATTTTT GCTGATAAAG CTCTTGGCAT ATGTCGATTT AGGAATGACA
ACTGGAGCAT TGATAGGATT GATAGCCTTA TTTTTAAGGC TCTATCCTAT CTTTAACATC
GGAAGGATAT TGATTTTAAC CAGTCCCTTA AAAATTATGA GCGCATTGCG TGCGGTAAAA
GCGCCGCAAT CTCTTTCGAT AGGACTGGTT ACCGCCTTAC GCTTTTTGGA CGAAATGACG
GCACGGTTAA ACGAAATAAA AAACGGTATG AAGGTGCGGG GTTTGCGTTT GAGCCTGTTA
CATCCTATCC GTTCGTTTGA ACTCTATCTT ATTCCCCTTA TTTATAAATG TCTTCATGTA
AGTGAAACGC TGACCTCTTC GATAATCGCA AAGGGGATTG AGTACGAAGG AAAAAAGACG
AGTTATAAAC CGGTGCGCTT CGGCTGGTAT GATACGGTGG GTTTATTAGC AGCTGTTTTT
TTACTATGGA TATCCGTATG GGCATAG
|
|---|
| Protein sequence | MKPARNTQGW SMNPITLFIL ILLTSFLVFL VNQTMYYVLL GMSFLFLFLF SYTEGVKRAL
AYIGLFLLIK LLAYVDLGMT TGALIGLIAL FLRLYPIFNI GRILILTSPL KIMSALRAVK
APQSLSIGLV TALRFLDEMT ARLNEIKNGM KVRGLRLSLL HPIRSFELYL IPLIYKCLHV
SETLTSSIIA KGIEYEGKKT SYKPVRFGWY DTVGLLAAVF LLWISVWA
|
|---|
| |