Gene TDE1547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1547 
SymbolrnhB 
ID2740909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1591264 
End bp1591860 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content36% 
IMG OID637160429 
Productribonuclease HII 
Protein accessionNP_972153 
Protein GI42527055 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.040973 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTATGCG GTATAGATGA GGCGGGAAGA GGGCCCCTTG CAGGTCCTGT TACGGCAGCT 
GCCGTTATCC TTCCAAGCAG CTTTGATTTT TCAATTTTAA AAGATTCAAA AAAACTGACA 
GAAAAAAAAA GAGAAGAAGT ACGTAAAACC ATATATGCCG ACCCAAATGT TATTTGGGCT 
ATCGGCTGGG CATCCAATTA TGAAATAGAT GAGATAAATA TCTTGCAGGC AACTTTTTTG 
GCAATGGAAA GAGCTTATGA AGGCCTTTAT TTAAAACTTC AAGAATTCTG TAAATTAAAC 
AATGATAAAT TTATAGAACC GGATATTATT GTTGACGGTA ACTTTATTCC CAATATTAAA 
AATTGCTCTT CGATTAAAGC TCTCGTAAAA GCTGATGATT CCGTTTATGA GGTTATGGCT 
GCTTCTATTT TAGCAAAGAC TGCAAGGGAT AGAATGATGA TACGCTACTC TTGGATTTAT 
CCTGAATACG GATATGAAAA ACACAAGGGT TACGGAACAA AAAAGCACAT AGAAGCAATT 
AGATTTAACG GCTATAGTCC GATTCAGCGC AGATCTTTTT TTGTAAAAAA TTTGTAA
 
Protein sequence
MLCGIDEAGR GPLAGPVTAA AVILPSSFDF SILKDSKKLT EKKREEVRKT IYADPNVIWA 
IGWASNYEID EINILQATFL AMERAYEGLY LKLQEFCKLN NDKFIEPDII VDGNFIPNIK 
NCSSIKALVK ADDSVYEVMA ASILAKTARD RMMIRYSWIY PEYGYEKHKG YGTKKHIEAI 
RFNGYSPIQR RSFFVKNL