Gene TDE1538 details

Gene Information

• Locus tag: TDE1538
• Symbol: ligA
• ID: 2740900
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1581708
• End bp: 1583645
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637160418
• Product: DNA ligase, NAD-dependent
• Protein accession: NP_972144
• Protein GI: 42527046
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAAG AAAAAAGAAT TTTAGACCTT GAAAAGACCA TAAAAAAACA TCAAGACCTT 
TATTATAATG CCCAACCTGA AATTTCGGAT GCGGAATTCG ATGCTCTTTG GGATGAATTA 
AAAGCACTGG ATCCTCAAAA TAAACTTTTT TTTACGGTTC CGCTGGAGTC TACCGAGGGT 
TTTGCAAAGT CGGAGCATAT TATTCCTATG GGAAGTCAGG AAAAGGCTGC CGATCCGCCT 
TCCTTTGAAG CTTGGGCCTT AAAGATGCCC TTTAAAGAAT ATATCGTGCA ATATAAAATG 
GACGGGGCAA GTCTTGAGCT TCAATACGAA GAAGGGCATT TTGTGCGTGC CGTTACCAGA 
GGCGACGGAA AAATCGGGGA CGATATAACC GAGAATGTAC TTAAAATGAA AGGGCTGATA 
AAAGATATTA CTGTAAATGC GGGGCCTGCC TATGGGACTA AACCCTTTTC CGGCGGAATA 
AGGTGCGAGG TTATAATGCT TCGTTCCATT CATCAAAAAT ACTTTAAGGA TAAGGCTAAT 
TGCCGAAATG CTGCAAACGG GCTTATGAAA AAAAAGAACG GAGAATTGTG CGAACACCTA 
AATCTTTTTG CCTATGATGC CGTTCAAGGA AGTATAGGCC GCCCTTTTAC GGGAGATGCC 
CCCTTTAAAA CCGAGTCCGA AAAACTCGTC TGGCTTAAAA AAGCGGGCTT TAATTGTGTT 
GAAGTAAAAT ACTGTAAAAG TATTGCTGAA GTAATAGAAT ATAGGGCTCA TGTTATGGAT 
ATCCGCCCTT CCTTGGACTA TGACATAGAC GGCCTTGTAA TCAAAAATGA TACAATCGAT 
CCTGAAGACA TGAAAAGAGC CCGTCCAGAA AAGCAGATAG CTTTTAAGTT CAGCTTGGAA 
GAAGCGGTTA CCGTCCTAAA AGAAATCGAA TGGAGCGAGT CGGGGGCTAC CTATACCCCC 
ATAGCCCTTA TCGAGCCTGT ACGCCTTGCC GGTACTACGG TAAAAAGAGC AAGCCTTGCA 
AACCCGAACA TAATCAAGGC CCTAAACTTA AAAATCGGAA GCAGGGTAGT GGTAACCAAG 
AGGGGGGAGA TAATTCCTAA GATAGAAGCC CTTGCAGAAA ATCCTCCTAA TGTTAAAGAA 
ATAGAATATC CAGATACCTG TTCCGTATGC GGCAGTCCTC TTACCAATGA GGGTACAAGG 
CTTTATTGCC CCAACATGAG CTGCCCTAAA CTTATCCATC ACCGAATCGA AAAATGGATA 
AGCGTTCTCG ATATAAGGGA TTTCGGTATA ACCCTCATAA AAAGACTTTT TGAGATGGGA 
CGGGTTAATT CAATCACCGA TTTATATACC CTCACTGTCG AAGAATTGGC AGCTATAGAC 
CGCATGGGAA AGCTCTCTGC CGAAAAGGTC TATAAGGCCC TCCATTCCAA AAAAGAAATA 
AGCTTAACCG AATTTATTGC CGGCTTTGAT ATTGAAGGAA TCGGCGAAAC AATGGTCGAA 
AAGCTTGAAG AAGCGGGTTT TAATGATTTG AATGAGCTTC TTGGAGCCTC GGAAGCCGAC 
TTTGCAAATG TTTATCAGTT CGGGCAGGTT CTATCCCATA CCTTAGTAAC AAACCTTTCG 
ATCTTAAAAG ATGAGATGAC CGGATTGATA GATAAGGGTT ATATAAAAAT TAAACCTCCG 
CTTACATCGG AAGAGGGGGC AGTTTTAAAG GGCTTAAGTT TTTGTTTTAC TGGGGAGCTT 
AACACGATGA AGAGGGCTCA GGCTGAAGCC TTGGTAAAAG AAAAGGGGGG AACTGTAAAA 
TCTTCCGTTG TAAAGGGCCT AAGTTATCTT GTAACCAATA CACCCGATTC GGGGTCATCT 
AAAAACAAAA AAGCCCAAGA ATTGGGAACT GCAATCATAA CCGAAGAGGC TTTTTTAAAT 
CTTATTGGGA AGGTATAG 

 

Protein sequence

MAKEKRILDL EKTIKKHQDL YYNAQPEISD AEFDALWDEL KALDPQNKLF FTVPLESTEG 
FAKSEHIIPM GSQEKAADPP SFEAWALKMP FKEYIVQYKM DGASLELQYE EGHFVRAVTR 
GDGKIGDDIT ENVLKMKGLI KDITVNAGPA YGTKPFSGGI RCEVIMLRSI HQKYFKDKAN 
CRNAANGLMK KKNGELCEHL NLFAYDAVQG SIGRPFTGDA PFKTESEKLV WLKKAGFNCV 
EVKYCKSIAE VIEYRAHVMD IRPSLDYDID GLVIKNDTID PEDMKRARPE KQIAFKFSLE 
EAVTVLKEIE WSESGATYTP IALIEPVRLA GTTVKRASLA NPNIIKALNL KIGSRVVVTK 
RGEIIPKIEA LAENPPNVKE IEYPDTCSVC GSPLTNEGTR LYCPNMSCPK LIHHRIEKWI 
SVLDIRDFGI TLIKRLFEMG RVNSITDLYT LTVEELAAID RMGKLSAEKV YKALHSKKEI 
SLTEFIAGFD IEGIGETMVE KLEEAGFNDL NELLGASEAD FANVYQFGQV LSHTLVTNLS 
ILKDEMTGLI DKGYIKIKPP LTSEEGAVLK GLSFCFTGEL NTMKRAQAEA LVKEKGGTVK 
SSVVKGLSYL VTNTPDSGSS KNKKAQELGT AIITEEAFLN LIGKV