| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1320 |
|---|
| Symbol | |
|---|
| ID | 2739578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1357904 |
|---|
| End bp | 1359478 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637160197 |
|---|
| Product | ComEC/Rec2-related protein |
|---|
| Protein accession | NP_971926 |
|---|
| Protein GI | 42526828 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0658] Predicted membrane metal-binding protein |
|---|
| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.725773 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTAAATG AAAACAAATT AACACGTAAT AAGTTTTTTG TATTAAAACC GATTGTAGTT
TCAGCTTGTG CCGCTGTTTT ATCTTTTTAT TTTTTTTGTG CAATAGGAAA TTATTTTAAT
AAATTTTTGA TAATTTCTAT TTTTATTTTA AGTTTTATAA TCGGTTTTAT ATTTAGAAAA
AAGAAGTTCT TTTTTATCTT TGCAGGGCTT TTTATAGGAA GCCTTGCAGT ATTGCGTTTA
TTTTTTATCT ATGCGGAGCC TTTTTCCCTT GCCGAATTAA ATAAGGTTAA AAGTATTCAA
GCCGAGCTTA CGGGAGAAGC TTATCCTGCA GGTGAAAAAT ACTATGCTGC AAATGCTAAA
CTTATTTCTT TTTCGTATAA TAATGGGGCC AAATTTTCTG CAAAGGGAAA TATAAAAATA
TTTTTTCCTT CGGATATGGT CTTACAAAAT AATGCTTACG GAATTTCGGT CTACAAGACG
GCCTACAAGG CCGCCGATTC GGCGCCCTAT AAGACCGGTT CAAGAAAAGA AGCTTTAGCC
AATTTTTCCA AGGGCGTAAT ATTTGAAGCT TCGGGCCGTT TCGGAGCAAA GAAAAACGCT
ATGAGCCCCT TGGCCTTTTT TGGAGATAAA TCCGTTCCCG AATTTTTAGG TTGGAGATCG
GCCGTTTTAA GATTCAGGGC TTTTTTACGG TTTTATCTTA TGCGTTTGTT GGCTGGGTGG
GGGAGTGCCG GTGCCTTGCT TTTAGCCCTC CTTTCTGCAA ACAGGGATTT TTTGATTCTT
CCTGTTTCGG AAGCTTTTAG AAATGCAGGG CTTGCTCACG TTTTGGCCCT TTCGGGGATG
CATGTTTCTT TGGTAAGCTT AACCGCCTTG CAGATGGGTT CTATATTCGG GAAAAAAAGC
CTCGCGATAA AGTTTTCACT AGTTTCTATT ATCTTCTTTG TTTGGTTTGC AGGAGCTGCC
CCCTCTCTTA ATCGTGCCCT CGGCATGATG ATTTTAATTA TTATAGGCAA GTCCTTGGGG
CTCCAGCCTC CTATGATTTC GGTTTTATGT ACAATGCTTA TTTTTCATAT TGCCGTAAAG
CCTGATGATG CCCTAAGTCT CGGCTTTATG CTTTCTTACG GTGCCTTGGC CGGAATTCTT
ATCTTTGGAA GTGCCGTATT CGATATCTTA AACGGAAAAA TACCTCCTAA AATATTGGGA
AGTTTTTCGG CTTCAATAGG TGCGCAAACC TTTACCGCTC CTATAGTAAT AAGCAAAATA
GGAGTCTTAG CGCCTATAGG TATAATTGCT TCTATCATTG TAAGCCCTCT GATATCTGCC
TTTTTAATTT TAGGCCTTGG GGCAATTTTT ATTTCTCTTT TATTTCCGTT TACGGGCTTT
ATTTTTTCTT ACTTTTTAAA TGCTTTTTAT GATTTGATAT TTTTTATTAT TCGAACTTTT
GCCCTTTTTC CGCTGATGAC GGCAGATACT TTTTTTGCCG GTTTAACTTT TGCAATACTT
CCCTTTACGG CCGGCTTAAT TTGTGTGTTT TATGCCGATA GAAAGCTAAA AAAGATGGAG
AACCTTTTAA AATGA
|
|---|
| Protein sequence | MVNENKLTRN KFFVLKPIVV SACAAVLSFY FFCAIGNYFN KFLIISIFIL SFIIGFIFRK
KKFFFIFAGL FIGSLAVLRL FFIYAEPFSL AELNKVKSIQ AELTGEAYPA GEKYYAANAK
LISFSYNNGA KFSAKGNIKI FFPSDMVLQN NAYGISVYKT AYKAADSAPY KTGSRKEALA
NFSKGVIFEA SGRFGAKKNA MSPLAFFGDK SVPEFLGWRS AVLRFRAFLR FYLMRLLAGW
GSAGALLLAL LSANRDFLIL PVSEAFRNAG LAHVLALSGM HVSLVSLTAL QMGSIFGKKS
LAIKFSLVSI IFFVWFAGAA PSLNRALGMM ILIIIGKSLG LQPPMISVLC TMLIFHIAVK
PDDALSLGFM LSYGALAGIL IFGSAVFDIL NGKIPPKILG SFSASIGAQT FTAPIVISKI
GVLAPIGIIA SIIVSPLISA FLILGLGAIF ISLLFPFTGF IFSYFLNAFY DLIFFIIRTF
ALFPLMTADT FFAGLTFAIL PFTAGLICVF YADRKLKKME NLLK
|
|---|
| |