| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1082 |
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| Symbol | |
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| ID | 2739094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1113275 |
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| End bp | 1114312 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637159956 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | NP_971690 |
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| Protein GI | 42526592 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTCA ATAAGAGTGT TCCTTGCAGA TCCATATCCG AAAAATTTAA GGTTGACGGT
CTTGTATCTC CTTGCAGGAT TGATGTTTAT TGTACCGAAA CCTTGAAACA CTTAAGCCGC
TCTCAATTAA AGACGGGCTT AAAGTCCCTT TATGTAAATT CGCAAAAAGC CAAGCTTTCC
CGCAATGTTC AAAACGGAGA CCTTATTGAG CTTGTTTGGG ATAATCCGAT CCCCGAATAT
GCTCATCCTC AAAAACTTCC GCTTAATATA ATTTATGAAG ACGAGAATAT AATTGTTGTA
AACAAGGAAA GGGGCATGGT AACGCATCCG GCAGGCGGAA ATTGGGACGG CACCCTTGTA
AATGCTTTAA ATTATTACAG ACTTTATGAT TCTAGGATTA AGGATGAGTT TGCCGTAGAA
CTTAATAAGC TTTTAAGTGG CGAAGTAAAG AATATTGAAA AACTTTCTTT GGAGCCCTAC
CGCATGGGTA TTGTTCACCG TCTGGATAAG GAAACTTCGG GGCTTATTAT TACGGCAAGG
AATTTAAAAA CCGAAAAGCT TTTAAAATCT TTTTTTAAAA AAAGGGCGGT AAAAAAATAT
TATCTTGCAG TCCTTGACGG CGTTCCGCCT AAAAATAAGG GCAGGATAAA GACTTCTGTT
TTTCGATCAA GTTCCGACAG AAAAAAATTT AGCGTCTCTG CCGATTTGTC AAAAGGGAAA
AAAGCTCTTT CAGCCTATAA GGTTTTGAAA TCCGACGGAA AAATGTCCTT GGTTCTTTTT
AGGATTTACA CAGGCCGGAC TCATCAAATC CGCTTACATG CCAAGTTTAT GGGATGTCCC
GTTGCAGGAG ACAAAGTTTA CGGCAAAAAA AAGACAGGTC TTGAAAAGAA AACAGGTCTT
GCCAAAAAGA CCGGTATGCC GCTTATGCTT CATGCTTATA AGCTGATAAT TCCTGATACC
GTAAATTCAA AAAAAGAATT TAAGGCGCCT ATACCTAATG ATTTTAAACA AATACTGATA
CGGGAGGCTC TATGTTAA
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| Protein sequence | MTLNKSVPCR SISEKFKVDG LVSPCRIDVY CTETLKHLSR SQLKTGLKSL YVNSQKAKLS
RNVQNGDLIE LVWDNPIPEY AHPQKLPLNI IYEDENIIVV NKERGMVTHP AGGNWDGTLV
NALNYYRLYD SRIKDEFAVE LNKLLSGEVK NIEKLSLEPY RMGIVHRLDK ETSGLIITAR
NLKTEKLLKS FFKKRAVKKY YLAVLDGVPP KNKGRIKTSV FRSSSDRKKF SVSADLSKGK
KALSAYKVLK SDGKMSLVLF RIYTGRTHQI RLHAKFMGCP VAGDKVYGKK KTGLEKKTGL
AKKTGMPLML HAYKLIIPDT VNSKKEFKAP IPNDFKQILI REALC
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