Gene TDE1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1020 
Symbol 
ID2741499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1051655 
End bp1052683 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content37% 
IMG OID637159893 
Productdicarboxylate transporter, periplasmic dicarboxylate-binding protein, putative 
Protein accessionNP_971628 
Protein GI42526530 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA AATTATTGTT TGCTTTTTTT GTACTTGTAA TGATTTCAGG TATCTTTGCT 
CAACAGAAGA TTGTTTTAAA GATTGCAAGC AGTGCCCCCG CGAGGACTCC TTGGGATATC 
GAATTAAAAA AGCTGGCCCA AGAGTGGAAC AAGATAACAA AGGGTCTTGT AAGCGTCAGG 
TTTATGGATA TGACTGTACT CGGAGGAGAA AAAGCAGGGG TTGTAAAGAT GAAGCCTTCA 
CGTCCAGGAC AAAGGCCGCA AATAGACGGA GCCATATTAA GTCCGGTAGG CTTAAATGAA 
CTTGCGCCTA ATGCTAAAAT TTTCACCCTT TCCCTCCCCT TCTTAATACA GAATCAAGAA 
GAACTTGATC TGGTTTTAAG CGAATACGGA TATGCCTTTG AAAACGAAAT TCAAAAAAAC 
GGATGCAAGC TTATAACATG GTCCAATGTA GGATGGCTTT CATTTTATAC AAAGGATTCA 
TATTCAAACC TTAACGAATT AAAAAAGATA AAAATGCTAT GCTCAAACGA CACAAAAGAC 
TTTACCGATG TGCTAAAAAT TTCAGGTTTT AATGTACTAC CCGTAGACCC TGCAAAATTT 
ACTCAAGAAT TAAAGGCTGC AGCAGGAGCA AGAAGTTTTG CATCGGTTTC TATTCTTGCT 
TATACGCTAA GACTGTACAA GGATGTATCC TACATGCTTG ATGCACGTCT ATGCCCTATA 
ATGGCAGGCT TTGTCATGTC GGATGAATCT TGGGCTCTTA TCCCTGATCA GTATAAACCT 
GCAATGCTGG AAGCAATGAA TAAAACAACA AAAAATCTAA ATGCAGCCCT TGAGGATATG 
GAAAGGGAAT ATGTGAAAGA AATGAAGCAA GGTGGTATAA AAATAATAAG CCTTAACTCT 
CAACAAAAAA AGGAATGGAC AAAAGAATTC CAGGAAGATA TGAAAAGAGT TCAAAAAACA 
CTTCCTAATA TCATCAATGC GGAAATATAC GAAAAAATAA CAAAACAGCT TGAAGCATAC 
CGAAAATAA
 
Protein sequence
MKKKLLFAFF VLVMISGIFA QQKIVLKIAS SAPARTPWDI ELKKLAQEWN KITKGLVSVR 
FMDMTVLGGE KAGVVKMKPS RPGQRPQIDG AILSPVGLNE LAPNAKIFTL SLPFLIQNQE 
ELDLVLSEYG YAFENEIQKN GCKLITWSNV GWLSFYTKDS YSNLNELKKI KMLCSNDTKD 
FTDVLKISGF NVLPVDPAKF TQELKAAAGA RSFASVSILA YTLRLYKDVS YMLDARLCPI 
MAGFVMSDES WALIPDQYKP AMLEAMNKTT KNLNAALEDM EREYVKEMKQ GGIKIISLNS 
QQKKEWTKEF QEDMKRVQKT LPNIINAEIY EKITKQLEAY RK