Gene TDE0883 details

Gene Information

• Locus tag: TDE0883
• Symbol: rimM
• ID: 2739757
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 901825
• End bp: 902364
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637159757
• Product: 16S rRNA processing protein RimM
• Protein accession: NP_971493
• Protein GI: 42526395
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.000602503
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTGC TTGCAACAGG ACGAATCCGC GGTACCTTCG GGATCGAAGG GTTTGTAAAA 
GTTGAAAGTT TTTCCGGAGA ATACGAGCAT TTTTTAGGTT TTGACAGAGT TTTTTTAAGT 
ATTCTTAAGG AAAAATTAAG AGAGCAAAAA TATAAAGACG GCTGGTTTGA AATTGAAGAA 
GTTAATTTAA GAAAGGCCGA TGCTCTTGTA AAATTTAAGG GGATAGACAA CCCCGAAGCC 
GCCAAGTGTT TGACGGGTTC GGAATTGTTT ATTCCTAGGG ACAAGGCCGC CCCCCTTGAT 
GAGGGCGAAG TTTATGTCCA TGATCTTTGT AATTGTAATC TTGTATGCGA AGGAACTCTT 
GTTGGAAAAA TAACAAGTGT AGCAGAAGGC GGAGGCGGTT ACCTCTTAGA AATAGCCGGA 
AAAACCTCCG AGGCTGCTGC GGAATCGAGC TTTTATGTTC CCTTTAACAA GGAATTTATC 
GGAAAAATCG ACTTAAAAGC CAAAACCGTG GAGCTCATGC ACCGCTGGAT TCTTGAATGA 

 

Protein sequence

MDLLATGRIR GTFGIEGFVK VESFSGEYEH FLGFDRVFLS ILKEKLREQK YKDGWFEIEE 
VNLRKADALV KFKGIDNPEA AKCLTGSELF IPRDKAAPLD EGEVYVHDLC NCNLVCEGTL 
VGKITSVAEG GGGYLLEIAG KTSEAAAESS FYVPFNKEFI GKIDLKAKTV ELMHRWILE