Gene TDE0792 details

Gene Information

• Locus tag: TDE0792
• Symbol: rplQ
• ID: 2740670
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 818527
• End bp: 819066
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637159665
• Product: 50S ribosomal protein L17
• Protein accession: NP_971402
• Protein GI: 42526304
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0203] Ribosomal protein L17
• TIGRFAM ID: [TIGR00059] ribosomal protein L17

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0000119355
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCATA AGAACGGCTT TAATCCGCTT TCGCGTACAA CTGCACATCG CCGTGCTTTG 
CACCGAAATA TGGTTACATC GCTATTTAAG TACGAGCGGA TTACGACAAC AAAACAAAAA 
GCGATGGAAG TACGCCGAAC TGCGGAAAAA TTGATTACAC GCTCAAAGGT TGATACATTC 
AACAACAGGC GTCATGCTGC AAAGTATATC TGGGATGATG ATATTGTAAA AAAACTATTC 
AGCGATATCG GTCCTAGAAT GAAAGACAGA AACGGCGGTT ACACCCGTAT CTTAAAAATC 
GGCTTCCGTG AAGGCGATGC AGCTGATGTT GCTATCTTGG AACTTGTAGA CTATGACTTT 
GAAAAAAAGG AAAAGGATAC AAAGAAAAAA GATGATTCAA AAAAATCCGA TGACAAAAAG 
ACTTCCAAGA AAGAAGCAGG TTTTAAATCG TCAAAGGGTG AATCAGAACA CAAAAAAAAT 
ACCGATCAGG TAGTAGATAG TTCATCAAAT CGGAGGTACA ACCGTGTCAA AGGCTCATAG 

 

Protein sequence

MKHKNGFNPL SRTTAHRRAL HRNMVTSLFK YERITTTKQK AMEVRRTAEK LITRSKVDTF 
NNRRHAAKYI WDDDIVKKLF SDIGPRMKDR NGGYTRILKI GFREGDAADV AILELVDYDF 
EKKEKDTKKK DDSKKSDDKK TSKKEAGFKS SKGESEHKKN TDQVVDSSSN RRYNRVKGS