Gene TDE0784 details

Gene Information

• Locus tag: TDE0784
• Symbol: rpsE
• ID: 2740662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 814031
• End bp: 814552
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637159657
• Product: 30S ribosomal protein S5
• Protein accession: NP_971394
• Protein GI: 42526296
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0281863
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCATC AAAAAGAATC AAAACGGGAT AACCAGCATA CCGATAAAGA ATATGTTGAA 
AAGCTTGTTA AATTGAACCG AACAGCTAAG GTTGTAAAGG GCGGACGCAG GTTCTCCTTT 
TCTGCTCTAA CTGTTGTCGG CGATCAAAAA GGACGAGTAG GATACGGTTT CGGTAAGGCA 
AATGACGTAA GCGATGCTAT TCGAAAGAGT ATCGAAAAGG CAAAAGCCAA CATGGTAACC 
TTTCCGCTTA AAAACGGTAC AATTCCTCAT GAGGTTCAAG GCAAGTTTAA GGGTTCGTCA 
GTTCTTTTGC GCCCTGCTTG TTCCGGTACC GGAATTATCG CAGGCGGTAC AATCCGTGCT 
ATTATGGAAG CTGCCGGTGC AACCGACTTG CTTTCAAAAT CATTGGGATC AAGCTCCGCA 
GTAAACGTAG TTAAGGCGAC CTTTGATGCC GCAAGTCTTT TGATGGACGG CAAAAAAATT 
GCTAAAAGCC GCGGAAAAAC CCTTTTGGAT GTATGGGGGT AA 

 

Protein sequence

MSHQKESKRD NQHTDKEYVE KLVKLNRTAK VVKGGRRFSF SALTVVGDQK GRVGYGFGKA 
NDVSDAIRKS IEKAKANMVT FPLKNGTIPH EVQGKFKGSS VLLRPACSGT GIIAGGTIRA 
IMEAAGATDL LSKSLGSSSA VNVVKATFDA ASLLMDGKKI AKSRGKTLLD VWG