Gene TDE0643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0643 
Symbolpth 
ID2740474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp679306 
End bp679917 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content41% 
IMG OID637159519 
Productpeptidyl-tRNA hydrolase 
Protein accessionNP_971257 
Protein GI42526159 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0193] Peptidyl-tRNA hydrolase 
TIGRFAM ID[TIGR00447] peptidyl-tRNA hydrolase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0101445 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAGATT TAATCGTTTT TTTAGGCAAC TACGGAAAAA AATATGAAAA TACAAGGCAT 
AATGCAGCTT GGGTTTTATG CGATTCAATA GAGATAGGCT CAAATGCCGT GTGGCAGAGT 
AAATTTAAGG GACAATATGC AAAGCTGCCT TCTTCTATGA CGCCTGGCAG GGCTGTACAT 
CTATTAAAAC CCGAAACCTA TATGAACCTA TCGGGAGAAA GCGTAATAGC AGCCGCATCT 
TTTTTTAGAC TAAAGCCTGA AAATATTTTA ATAGTGCATG ATGAACTGGA ATTAAAACCC 
GGCATTCTCA GCTTTAAGTG GTCGGGAGGC CTCGGCGGAC ATAACGGATT ACGCTCCATA 
AAATCGGTTT TAAATACGGC AGATTTTTTC CGCCTAAGGA TAGGCATAGG CCGGCCCGAT 
TTTTCTTCTC AAGGAGGAGA TGCTTCCCCC GATATTTCAG GCTATGTGCT TTCCCGTTTT 
GCACAATCCG AATTGGATGT CCTAAAAAGC CAAGTACCTC AAGCCGACTC TTTTTTTAAA 
GAATTATTGG AAGCTGATGA GCCTCAAACT CTTATAAAAA AATGGGCTAA AGTATTGCCT 
TCTCAAAGTT AA
 
Protein sequence
MIDLIVFLGN YGKKYENTRH NAAWVLCDSI EIGSNAVWQS KFKGQYAKLP SSMTPGRAVH 
LLKPETYMNL SGESVIAAAS FFRLKPENIL IVHDELELKP GILSFKWSGG LGGHNGLRSI 
KSVLNTADFF RLRIGIGRPD FSSQGGDASP DISGYVLSRF AQSELDVLKS QVPQADSFFK 
ELLEADEPQT LIKKWAKVLP SQS