| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0425 |
|---|
| Symbol | |
|---|
| ID | 2739589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 479840 |
|---|
| End bp | 482005 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637159297 |
|---|
| Product | bacteriocin ABC transporter, ATP-binding/permease, putative |
|---|
| Protein accession | NP_971039 |
|---|
| Protein GI | 42525941 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01193] ABC-type bacteriocin transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTAATA AAAAATCCAA TTTAACCGTG GTCTTGCAGC AAGATACTCA GGACTGCGGT
CCTGCCTGTC TTGCAACTCT TTGCAAATAT TACGGGAAAA GAATACCTAT TTCTTATATA
CGCAAAATAG CAGGTACGGA TAGAGGCGGT ACCTCAGGAT ACGGAATTGT TCGCGGTGCA
GAAGAATTAG GATTTTCATG TCAGGGAGCT TTAAGTCCCG AAAAAGAATT TTCCGAGGAC
ATCGTCTTCC CCATAATTAC TCATTTAAAA AGAAATGATT CAGAACATTA TGTTGTAATT
TTTAAAATTA AAAAAGATAA CGTAATTATA GGAGACCCTG CTTCAGGGCT TTTGAAAATA
CCTATAAGTG AATTTAAAAA AGAGTGGAGC GGTGTCTTTT TTGTTTTAAC TCCTCAAGAA
AAATTTAAGT TAAATAAAGA TTCAGGCAGT ATTTTAACCC GTTTTTTTTA TCTTTTAAAG
CCCCATAAAA AAATAGTAGG CGAAGTTCTT ACGGCAAGTA TACTCTTAAG TTTTTTAGGT
ATAATCGTTG CTTTTTATTT TCGGTTTTTG GTTGATGAAG TTTTATATTC AGGTACAAAA
ATAACGCTTA ACTTGGTTTC TTTAGGATAC CTTGTTGTAA TTATTTTTCA AACGCTGTTA
AATATTTCGC GTAATCAACT TATGCTTCAT ATGAGCAGTA AGATGGAAGC TGCTTTAAGT
TTTGAATACT TTGACCATGT TATTCATCTT CCGATGGATT TTTTTACTAC ACGCAAAACA
GGAGAGGTCC TTTCCCGTAT TCATGATGTA AATACTATAA GACAGGTTCT GTCTTCTACA
GGAATGAATA TTATCTTGGA CTCTCTAATG TTGGTTGTAG GCGGAGCTTT TTTATGTGCA
TCGGGCGGTA TACTCATGCT GATTGCCGTT ATTCCGGTTA TTATTTCCGC TATTGTAATA
TGTTTTTTTG TGCAGCCATA TAGGAGAATG ATAAAAGAAA AGGCCGTAAT AGATGCCGAA
AAATATTCGG GTATGGTAGA GTCCATAAAC GGAATAGGAA CGGTAAAGGC TCTTTCAAGT
GAAGATCTTG CATTTGAGCG AACCGAGGTA AAAATGGTAG ATTCCGTAAA TAAGGGGATT
GAAATAGGTA CGCTTGCAAA TATAGAAAAT GCCGTGCAAA TGACTCTCTC ACAGCTTGGA
ACTTTAGGCG TTTATTGGGT AGGCAGTTTT AAAATATTAA CCGGAACTAT GAGCCTCGGG
CAGTTGATAG CATTTTCTAT TTTATCGGGA TATTTTTTAG GCCCCTTAGG GCGTTTATTA
ACCTTACAAC CCACTTTACA GGAAGCCTTT GTTGCAGCAA ACCGTCTTTC CGAAATACTT
GATATGCCTA TCGAAAAAAC AACCTATTCG GGAAAAACTA AAATAGAAAA TATAGAAGGT
TCTATCGACA TTAAAGACCT TTGTTTTGCC TACGGTTTAC ATGGTAATAC ATTAGAAAAT
ATTAATTTAA ATATAAAACC CGGAATGAAA ATTGCTTTTG TAGGAGCCTC CGGTTCAGGC
AAAACAACAC TTGTAAAACT GCTTATGAAA TTTTATAATT TTCAAAGCGG GGAAATCCTT
ATTGACGGTT TAAATATAAA AGATTTGGAA ACCGAATCGT ATCGTAAACT TATAGGTTAT
GTACCTCAAG AAGTTCTATT ATTTTCAGGT TCAATTCGAG AAAATATTTT ATGGGGAAAC
GGGTTTTTAC CTGAAAATGC CTTGTATTAT GCTGCAAAAG TTTCCCGCTC CGATGCTTTT
ATCAATAAGC TGCCCGATCG TTACGAAACA ATTATAGGAG AACGGGGAGC AACTCTTTCG
GGCGGTGAAC GGCAGCGTAT AGCCTTGGCC CGTATTTTAC TTAGAGAACC TAAAATACTG
ATACTTGATG AGGCGACTGC AAGTTTAGAT GCTATTACCG AAAAAGCTAT AATGAACACA
ATTGAAGAAA TAATTGAAAA TAAAACTACA ATTATTGTTG CTCACAGGCT TTCGACAATT
ATAAATTGCG ATAAAATTTT TGTTTTTGAT GGAGGTAAAA TAAAAGAAGA AGGAACACAT
AAAGAGCTTA TTTTAAAAAA CGGAATATAT ACCGATCTTT GGAATGCTCA AAATACAGGT
GTTTAA
|
|---|
| Protein sequence | MFNKKSNLTV VLQQDTQDCG PACLATLCKY YGKRIPISYI RKIAGTDRGG TSGYGIVRGA
EELGFSCQGA LSPEKEFSED IVFPIITHLK RNDSEHYVVI FKIKKDNVII GDPASGLLKI
PISEFKKEWS GVFFVLTPQE KFKLNKDSGS ILTRFFYLLK PHKKIVGEVL TASILLSFLG
IIVAFYFRFL VDEVLYSGTK ITLNLVSLGY LVVIIFQTLL NISRNQLMLH MSSKMEAALS
FEYFDHVIHL PMDFFTTRKT GEVLSRIHDV NTIRQVLSST GMNIILDSLM LVVGGAFLCA
SGGILMLIAV IPVIISAIVI CFFVQPYRRM IKEKAVIDAE KYSGMVESIN GIGTVKALSS
EDLAFERTEV KMVDSVNKGI EIGTLANIEN AVQMTLSQLG TLGVYWVGSF KILTGTMSLG
QLIAFSILSG YFLGPLGRLL TLQPTLQEAF VAANRLSEIL DMPIEKTTYS GKTKIENIEG
SIDIKDLCFA YGLHGNTLEN INLNIKPGMK IAFVGASGSG KTTLVKLLMK FYNFQSGEIL
IDGLNIKDLE TESYRKLIGY VPQEVLLFSG SIRENILWGN GFLPENALYY AAKVSRSDAF
INKLPDRYET IIGERGATLS GGERQRIALA RILLREPKIL ILDEATASLD AITEKAIMNT
IEEIIENKTT IIVAHRLSTI INCDKIFVFD GGKIKEEGTH KELILKNGIY TDLWNAQNTG
V
|
|---|
| |