| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0400 |
|---|
| Symbol | |
|---|
| ID | 2739409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 450973 |
|---|
| End bp | 451893 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637159272 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_971014 |
|---|
| Protein GI | 42525916 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTA AACAACTTGA GATATTTATC AAACTTGTAG AAAATTTAAG CTTTTCCACT
ACTGCAAGCG AGTTGAACAT ATCGCAGCCC ACAGTCAGCC TCACCTTAAA GCAGCTTGAA
GAAGAGCTCG ATACTCCCCT CTTTTTGCGT TCTACCCGAG AGCTAAAATT AACCGAGGCA
GGAAATAAAC TTTACAACGA AGCAAAGAAC ATTCTCGCCG AAAGGGATAA GCTGATAGAA
AAATTTATCC ATCCTGAAAG GAAGGTTATA ACCATAGGAG CATCCACCAT TCCGGCAGGC
TACCTTCTTC CTTCAATAGT GAGAGAGTTT AAAAAAAAGC ATCCCGACAT TTATATAAAG
GTTGAAGAAA AAAACAGCCT TGAAACAATA AAAAAGGTTT CACTGAATAC CGTCGATATA
GGCATTGTCG GAATGAAGAT AGAAGATGAA AACTGCGAGT TTCTTCCAAT TTATAAAGAT
GAATTCGTAT TTATAAGTGC AAATAATTCC TATTACCAAA AGCTGAAAAA ATCAAATCCC
AACTTAAAAC GCATTGCCGA AGAACCATTT ATTATCCGTG AAGCCGGCTC GGCCGTTAAG
CAAAATATGG AGCTGATTTT AAAATCGCAA AAGATAGATT TAGATTCGAT AAATATAAGC
GCCTCGATAA ACGACACTGA GGTCATCAAG CAATTGACTG CAGAAGGACT GGGTACATCT
TTTATATCGA GAATAGCAGT TGAAGACATG GTAAAAAATA AAAAGTTGAT AGCCTTTGAG
CTGGGTGATG TTCCCCACCA ATACCGCAAT ATCTATCTGG TATGGAATAA AAAAATAAAC
TACGCAAGCC ATATCAAAGA CTTTTTAAAC TGCACGGAAT GTTTTAAGGT AAAAACAGCG
ATTGAAGAAA AAACTACTTG A
|
|---|
| Protein sequence | MEFKQLEIFI KLVENLSFST TASELNISQP TVSLTLKQLE EELDTPLFLR STRELKLTEA
GNKLYNEAKN ILAERDKLIE KFIHPERKVI TIGASTIPAG YLLPSIVREF KKKHPDIYIK
VEEKNSLETI KKVSLNTVDI GIVGMKIEDE NCEFLPIYKD EFVFISANNS YYQKLKKSNP
NLKRIAEEPF IIREAGSAVK QNMELILKSQ KIDLDSINIS ASINDTEVIK QLTAEGLGTS
FISRIAVEDM VKNKKLIAFE LGDVPHQYRN IYLVWNKKIN YASHIKDFLN CTECFKVKTA
IEEKTT
|
|---|
| |