Gene TDE0394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0394 
Symbol 
ID2739403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp444121 
End bp445083 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content33% 
IMG OID637159266 
Productoligopeptide/dipeptide ABC transporter, permease protein 
Protein accessionNP_971008 
Protein GI42525910 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGT ATATTTTGAA AAGGAGTTTT TCAGCTTTTA TAACGATTAT TGTCGTTTTT 
ACCATTAATT TTATAATTAT TAATATTGCC CCCGGCAATC CCATTAAGAC TATGATGGGA 
AAAGAAACCG ATAATATTGA GCAAACTAAA GCTCTTGAAG AAAAATATGG CTTAAACAAG 
CCTCTATATG AGCAATATTT CCGATATTTA AAAAATATTT CAACAGGAGA TTTAGGAATT 
TCAATTATAT ACAATAAACC CGTTTCAAAA ATGATTTTAG AGAAAATAGG GCCTACAATC 
CTTCTTGTAC TTACAGCTGC AGTTATATCG CTTCTTCTTG GTACGGCTAT GGGAATAGTC 
GCTGCTCGGA AAGAAGGAGG TTTTATTGAT GTAAGCTTAT CGGGTATAAA CTATGTTTTA 
AACGCTTTAC CGTCTTTTTG GCTGGCATTA ATGCTGATTA TTTTATTTTC TACAAAATTG 
AAATGGCTGC CGACATTCGG AATGACCGAT CCCAGAGCAG GATATACCGG AATTAAATAT 
ATAAAAGATG TAATTATCCA CCTAATTTTA CCTATAACAA CTTTAGTCTT GATAGAGCTT 
CCGTTGTATT TTCGAATTGC GAAGTCTTCG GTTCTACAGG TAACAAATGA AGATTTTATT 
ATGACATTAA GAGCTGCGGG TATGAATGAA AAAAAGATTT TTAGAAAATA TATTTTTAAA 
AATGCGATTT TACCTACAAT TACCGTTTTC GGCATATCGT TGGCATATTT AATTACAGGT 
GTAGCTCTTA TCGAAATTGT TTTTGCATGG CCGGGAACGG GAAGGCTTGT ATTAAATGCC 
ATTAATCAAA GAGATTATCC CGTTTTAATG GGTATTTATC TCATTATGAG TATTGCAATT 
GCTGTTATGA TGATGGTTGT AGATATTGTG TATGCAATAG TAGATCCCAG AATCAGATAT 
TAA
 
Protein sequence
MKKYILKRSF SAFITIIVVF TINFIIINIA PGNPIKTMMG KETDNIEQTK ALEEKYGLNK 
PLYEQYFRYL KNISTGDLGI SIIYNKPVSK MILEKIGPTI LLVLTAAVIS LLLGTAMGIV 
AARKEGGFID VSLSGINYVL NALPSFWLAL MLIILFSTKL KWLPTFGMTD PRAGYTGIKY 
IKDVIIHLIL PITTLVLIEL PLYFRIAKSS VLQVTNEDFI MTLRAAGMNE KKIFRKYIFK 
NAILPTITVF GISLAYLITG VALIEIVFAW PGTGRLVLNA INQRDYPVLM GIYLIMSIAI 
AVMMMVVDIV YAIVDPRIRY