| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0327 |
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| Symbol | |
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| ID | 2741543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 361021 |
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| End bp | 365208 |
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| Gene Length | 4188 bp |
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| Protein Length | 1395 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 637159199 |
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| Product | CRISPR-associated Cas5e family protein |
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| Protein accession | NP_970941 |
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| Protein GI | 42525843 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3513] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01865] CRISPR-associated protein, Csn1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGG AAATTAAGGA TTATTTTCTC GGATTGGATG TAGGAACCGG ATCGGTTGGT
TGGGCAGTTA CTGATACTGA CTATAAACTC TTAAAGGCTA ATCGTAAAGA CCTTTGGGGA
ATGAGGTGTT TTGAGACGGC GGAAACTGCG GAAGTGAGAA GGCTTCACAG GGGGGCTAGG
CGCCGTATTG AGAGAAGAAA AAAAAGAATA AAGCTGCTTC AAGAGCTTTT TTCCCAAGAA
ATTGCAAAAA CAGATGAGGG ATTTTTCCAA AGAATGAAGG AAAGCCCTTT CTATGCAGAA
GACAAGACTA TATTACAGGA AAACACTCTT TTTAATGATA AAGATTTTGC CGATAAGACC
TACCATAAAG CCTATCCTAC CATAAACCAT CTGATAAAGG CTTGGATTGA AAACAAGGTA
AAGCCGGATC CAAGGTTATT ATACTTAGCC TGTCATAATA TTATAAAAAA AAGAGGTCAT
TTTTTATTCG AGGGCGATTT CGATTCAGAA AATCAGTTTG ATACTTCTAT ACAAGCCCTT
TTTGAATATC TGCGTGAAGA TATGGAAGTC GATATTGATG CCGATAGCCA AAAAGTAAAA
GAGATTTTAA AGGATAGCTC TTTAAAAAAT TCCGAAAAAC AAAGCCGCCT AAATAAGATT
TTAGGACTGA AACCCTCCGA CAAACAAAAA AAAGCTATTA CTAATTTAAT ATCAGGCAAC
AAAATAAACT TTGCCGATCT TTATGATAAT CCGGATTTAA AGGATGCGGA GAAAAATAGT
ATATCTTTTT CGAAAGATGA TTTTGATGCT TTGAGTGATG ATCTTGCTTC CATTCTAGGA
GATTCTTTTG AGCTTTTATT AAAAGCAAAG GCTGTATATA ACTGCTCGGT TCTTTCCAAG
GTAATAGGCG ATGAACAGTA TCTTTCTTTT GCAAAGGTAA AAATATATGA AAAGCATAAA
ACCGATTTGA CTAAATTAAA AAATGTTATA AAAAAGCATT TCCCAAAAGA TTATAAAAAA
GTATTCGGAT ACAATAAAAA CGAAAAAAAT AACAACAATT ACTCCGGATA TGTAGGCGTA
TGTAAAACCA AGAGTAAAAA ACTAATTATA AACAATTCTG TAAATCAAGA AGATTTTTAC
AAATTTTTAA AAACTATCCT TTCAGCAAAA TCCGAGATAA AGGAAGTAAA TGATATATTG
ACCGAAATTG AAACAGGGAC TTTTTTACCT AAACAGATAT CTAAAAGCAA TGCGGAGATT
CCTTATCAAT TACGCAAGAT GGAGCTGGAA AAAATATTAT CAAACGCAGA AAAACATTTT
TCCTTTTTAA AACAAAAAGA TGAAAAAGGT TTATCTCACA GTGAAAAGAT TATAATGCTT
TTAACATTTA AGATTCCTTA TTATATTGGA CCTATAAACG ATAACCATAA AAAATTTTTT
CCCGATAGAT GCTGGGTAGT AAAAAAAGAA AAATCGCCTT CCGGTAAAAC TACTCCATGG
AACTTTTTTG ATCATATCGA TAAAGAAAAA ACAGCTGAAG CATTTATTAC AAGCAGAACC
AATTTTTGCA CATATTTAGT AGGGGAATCC GTTTTACCAA AAAGTTCTCT TTTATATTCC
GAGTATACCG TTTTAAATGA AATCAACAAT TTACAGATTA TCATTGACGG AAAAAATATC
TGCGATATTA AACTAAAACA AAAAATATAC GAAGATTTAT TTAAAAAATA TAAAAAGATT
ACACAAAAAC AAATTTCAAC TTTTATCAAA CACGAAGGTA TTTGCAATAA AACTGATGAA
GTAATTATTC TAGGTATCGA TAAAGAATGT ACATCTTCGT TAAAATCATA TATAGAACTT
AAAAACATAT TCGGAAAGCA AGTAGATGAA ATTTCTACAA AGAATATGCT TGAAGAAATT
ATACGATGGG CTACTATCTA TGATGAAGGA GAAGGCAAAA CAATACTTAA AACAAAAATA
AAAGCCGAAT ATGGAAAATA TTGTTCTGAT GAACAGATCA AAAAAATTCT AAATCTTAAA
TTTTCAGGTT GGGGCCGCTT GTCACGCAAA TTCCTTGAAA CCGTCACATC AGAAATGCCG
GGTTTTAGCG AACCGGTAAA TATAATAACT GCAATGCGGG AAACTCAAAA TAATTTAATG
GAGTTGCTTA GCAGTGAATT TACATTTACT GAAAATATTA AAAAGATAAA TTCGGGATTT
GAAGATGCTG AAAAGCAATT TTCATATGAC GGTTTGGTTA AGCCTCTGTT TTTATCACCA
TCGGTAAAAA AAATGTTGTG GCAGACTCTA AAGCTTGTAA AAGAAATATC GCATATTACC
CAAGCCCCTC CTAAAAAAAT ATTTATAGAA ATGGCAAAGG GTGCAGAGCT TGAACCTGCG
AGGACTAAGA CAAGATTAAA AATTTTACAA GACTTATACA ATAACTGTAA AAATGATGCG
GATGCTTTTA GTTCCGAGAT AAAAGACCTT TCAGGTAAAA TAGAAAATGA AGATAATTTA
AGGCTTCGAA GCGACAAACT TTATCTTTAT TACACGCAGC TTGGAAAGTG CATGTATTGC
GGTAAACCGA TTGAAATAGG CCATGTATTT GATACAAGCA ACTATGATAT AGATCATATT
TATCCCCAAT CCAAGATTAA AGATGACAGT ATAAGTAATC GGGTTTTAGT ATGCAGCAGC
TGCAATAAAA ATAAGGAAGA TAAATATCCT TTGAAGTCTG AAATTCAATC AAAGCAAAGG
GGCTTTTGGA ATTTTTTACA ACGAAATAAC TTTATAAGCC TTGAAAAATT GAATAGGTTA
ACAAGGGCCA CTCCAATCTC GGATGACGAA ACGGCAAAAT TCATTGCCAG ACAGCTTGTA
GAAACAAGAC AGGCGACAAA AGTAGCTGCA AAAGTATTAG AAAAAATGTT TCCCGAAACT
AAGATTGTTT ATTCTAAAGC TGAAACCGTA TCAATGTTTA GAAATAAATT CGATATTGTA
AAATGCAGAG AAATAAACGA TTTTCATCAT GCTCATGATG CATATTTAAA TATTGTTGTC
GGAAATGTAT ATAATACAAA ATTTACAAAT AATCCTTGGA ACTTTATAAA GGAGAAACGG
GATAATCCAA AGATTGCCGA TACTTACAAT TATTATAAAG TTTTTGATTA TGATGTAAAA
AGAAATAATA TTACGGCATG GGAAAAAGGA AAAACAATTA TCACTGTGAA GGATATGCTT
AAAAGAAATA CCCCTATTTA TACACGCCAA GCCGCCTGCA AAAAAGGAGA ACTCTTTAAC
CAAACCATTA TGAAAAAAGG ATTGGGCCAG CATCCTCTAA AAAAAGAAGG TCCTTTTTCT
AATATTTCAA AATATGGGGG CTATAATAAA GTCTCTGCTG CATATTATAC TCTTATAGAA
TACGAAGAAA AAGGGAATAA AATACGAAGC TTAGAAACCA TCCCTCTATA TTTGGTAAAA
GACATTCAAA AAGATCAAGA TGTATTAAAG AGTTACTTAA CAGATCTGCT AGGGAAAAAA
GAATTTAAGA TTTTGGTTCC TAAAATAAAA ATCAACTCCC TCTTAAAAAT TAACGGTTTC
CCTTGTCATA TAACAGGGAA AACCAATGAT TCTTTCTTAC TGCGTCCGGC TGTTCAGTTT
TGCTGTTCAA ATAATGAAGT TCTTTATTTT AAAAAAATTA TAAGATTCAG TGAAATAAGA
AGTCAAAGAG AAAAGATAGG AAAAACAATT TCTCCTTATG AAGACTTATC CTTTAGATCT
TATATCAAAG AAAATTTATG GAAAAAGACA AAAAATGATG AAATAGGAGA AAAGGAGTTT
TATGACCTTC TTCAAAAGAA GAATTTGGAA ATCTATGATA TGCTTTTAAC AAAACATAAG
GATACTATTT ATAAAAAAAG ACCTAACTCT GCAACTATTG ATATCTTAGT CAAAGGAAAA
GAAAAGTTTA AATCTTTAAT AATCGAAAAT CAGTTTGAAG TTATTTTAGA GATTTTAAAA
CTGTTTTCTG CCACTAGAAA TGTATCAGAC TTACAACATA TAGGCGGAAG CAAATATTCA
GGAGTTGCAA AGATAGGAAA TAAAATATCT AGTCTTGATA ACTGTATTTT AATTTACCAA
TCAATAACAG GTATTTTTGA AAAAAGGATT GATTTGTTAA AGGTATGA
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| Protein sequence | MKKEIKDYFL GLDVGTGSVG WAVTDTDYKL LKANRKDLWG MRCFETAETA EVRRLHRGAR
RRIERRKKRI KLLQELFSQE IAKTDEGFFQ RMKESPFYAE DKTILQENTL FNDKDFADKT
YHKAYPTINH LIKAWIENKV KPDPRLLYLA CHNIIKKRGH FLFEGDFDSE NQFDTSIQAL
FEYLREDMEV DIDADSQKVK EILKDSSLKN SEKQSRLNKI LGLKPSDKQK KAITNLISGN
KINFADLYDN PDLKDAEKNS ISFSKDDFDA LSDDLASILG DSFELLLKAK AVYNCSVLSK
VIGDEQYLSF AKVKIYEKHK TDLTKLKNVI KKHFPKDYKK VFGYNKNEKN NNNYSGYVGV
CKTKSKKLII NNSVNQEDFY KFLKTILSAK SEIKEVNDIL TEIETGTFLP KQISKSNAEI
PYQLRKMELE KILSNAEKHF SFLKQKDEKG LSHSEKIIML LTFKIPYYIG PINDNHKKFF
PDRCWVVKKE KSPSGKTTPW NFFDHIDKEK TAEAFITSRT NFCTYLVGES VLPKSSLLYS
EYTVLNEINN LQIIIDGKNI CDIKLKQKIY EDLFKKYKKI TQKQISTFIK HEGICNKTDE
VIILGIDKEC TSSLKSYIEL KNIFGKQVDE ISTKNMLEEI IRWATIYDEG EGKTILKTKI
KAEYGKYCSD EQIKKILNLK FSGWGRLSRK FLETVTSEMP GFSEPVNIIT AMRETQNNLM
ELLSSEFTFT ENIKKINSGF EDAEKQFSYD GLVKPLFLSP SVKKMLWQTL KLVKEISHIT
QAPPKKIFIE MAKGAELEPA RTKTRLKILQ DLYNNCKNDA DAFSSEIKDL SGKIENEDNL
RLRSDKLYLY YTQLGKCMYC GKPIEIGHVF DTSNYDIDHI YPQSKIKDDS ISNRVLVCSS
CNKNKEDKYP LKSEIQSKQR GFWNFLQRNN FISLEKLNRL TRATPISDDE TAKFIARQLV
ETRQATKVAA KVLEKMFPET KIVYSKAETV SMFRNKFDIV KCREINDFHH AHDAYLNIVV
GNVYNTKFTN NPWNFIKEKR DNPKIADTYN YYKVFDYDVK RNNITAWEKG KTIITVKDML
KRNTPIYTRQ AACKKGELFN QTIMKKGLGQ HPLKKEGPFS NISKYGGYNK VSAAYYTLIE
YEEKGNKIRS LETIPLYLVK DIQKDQDVLK SYLTDLLGKK EFKILVPKIK INSLLKINGF
PCHITGKTND SFLLRPAVQF CCSNNEVLYF KKIIRFSEIR SQREKIGKTI SPYEDLSFRS
YIKENLWKKT KNDEIGEKEF YDLLQKKNLE IYDMLLTKHK DTIYKKRPNS ATIDILVKGK
EKFKSLIIEN QFEVILEILK LFSATRNVSD LQHIGGSKYS GVAKIGNKIS SLDNCILIYQ
SITGIFEKRI DLLKV
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