| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0184 |
|---|
| Symbol | |
|---|
| ID | 2741609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 218888 |
|---|
| End bp | 220648 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637159053 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_970800 |
|---|
| Protein GI | 42525702 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA AACTATTGTA CTCGCTTAAA CTGGTTTTTA AACTAAATCC GTTAAGCTTG
GTCTTAATTT TTACTTTTGC AATAATTTCT GCAATATGCA GTGCCGTTTT ATTGGTCTAT
ATAAAGGCTC TGACAGCAAG TCTAACGGCT TCATCGAGTT TAAATACTTT TGTTCAGACA
AATATGCTTA ATCTGACAAT AGCAGGCCTT TGCTTTTTGC TTACGGTTTC AGTTTCAAAA
TATCAGTCCG TATATTGCGA AAAAGCGGCT CTCAAAATAA ATAAAAAAAT AAACGCTTCT
ATTCTTAGCA AGGCGGAAAA GTTATACGGC TTACAGCATT TAAAGGATAG ACAGTATTTT
GTAACCATCG AAAAATTAAA TATGGGAGAT TTTGTAATTG AAAATTATTT AATTTCTTTT
TCGCCTCTTA TTGCCTTAAT TGTTAATACA ATCTGTATTT CCCTACTTTT TAATTTTATC
ACTCCGGTTT TACTAGTCGT ATTAATTGCC GCAAATATTC CTTCATTTTT TATACGAAAA
AAAGTTGCAA AAATCAAGCA AGAAGAGATT GAAAAAGGAA ATATCCCATC TTCAGCACTT
GAGTATTATT TTAGAAAATC GCTTGATGCC GCGGCTGCAA AAGATTTTAG ACTCTTTGCA
TTTACCGGCC TTTTCCTGAA AAAAATTGAT ACCTGTTTTT CAGAATTAAA AAATTTAAGA
ATGAATTCCA TTTCTAAAAC TTCAAGATGG AATTTGCTTA ATCTACTCAT AAAACTTATA
TGCACCGCAG GTATTTTCTT TTTATTCTTT AAATCAATCA TATCCGCAGA GATGTCTACC
GGTGCAATTA TGATGATCGT TGTAGTTCTC TTTCAGCTTT CTTCAAACAT TTCAGGTATC
GGTTCTTTTT GGGCTTATTT ACAAAAAGAA TTGGATTACT TTTATAATTA CAAATATTTT
TTGAGCTTAC AAACTATCCA AAACGGTAAG TTGATATTTA ATGAACCGGT TTCTTCAATT
GAATTTAAGT CGGTTTCTTT CGGATATGAC AGAAGAATGG TTTTAGAAAA CCTCTCCTTT
AAAATAGATT CAAAAAAGGT ATTTGCCCTT GTCGGCGAAA ACGGCGCAGG AAAATCTACA
ATTGTAAAAC TGCTTTTACG GTTTATAGAG CCCATCAGCG GCGAAATACT GATTAACGGC
ATTCCCATAA AAGAATTTGA AATAGAATCT TATAGAAACG CAATTTCGGT TATCTTTCAA
AATTTTATGC GATACGGACT TTCTGCAAAG GATAATATAT TTGCAAATCA AGATATTTCA
AAATATAACA ATATTGACTC AATATTATCT TCTCCTTTTT TTAAAAAATT GCCAAATCAA
GAAAACACCC AATTAAATAT GGGTTTCGGC GGTTATGATA TTTCAGGCGG AGAATGGCAG
CGCATTGCCG TCATGCGCGC CTTAAGTAAA CCTTACAGCC TTTTTATTGC CGATGAGCCT
ACTGCAAATA TAGACCCAAT CGAAGAATAT AATATTTTCC AAACAATTAT AAAAAAGACA
AAGGGTATCA GGTTGATTAT TACACACCGA ATGGGAAGCA TAAAAAATTG CGATGAAATT
TTCGTATTAA GGAACGGAAA AATAGAAATA AGCGGCCCCC ATTCCGAAAT TATGCAAAAG
TCCGAATATT ATGCAAGCCT TTACAATTCA CAAAAGTCTA TGTACACCCA TATTGAAAAA
GGAGAAGCAA ATGAAAACTA A
|
|---|
| Protein sequence | MFKKLLYSLK LVFKLNPLSL VLIFTFAIIS AICSAVLLVY IKALTASLTA SSSLNTFVQT
NMLNLTIAGL CFLLTVSVSK YQSVYCEKAA LKINKKINAS ILSKAEKLYG LQHLKDRQYF
VTIEKLNMGD FVIENYLISF SPLIALIVNT ICISLLFNFI TPVLLVVLIA ANIPSFFIRK
KVAKIKQEEI EKGNIPSSAL EYYFRKSLDA AAAKDFRLFA FTGLFLKKID TCFSELKNLR
MNSISKTSRW NLLNLLIKLI CTAGIFFLFF KSIISAEMST GAIMMIVVVL FQLSSNISGI
GSFWAYLQKE LDYFYNYKYF LSLQTIQNGK LIFNEPVSSI EFKSVSFGYD RRMVLENLSF
KIDSKKVFAL VGENGAGKST IVKLLLRFIE PISGEILING IPIKEFEIES YRNAISVIFQ
NFMRYGLSAK DNIFANQDIS KYNNIDSILS SPFFKKLPNQ ENTQLNMGFG GYDISGGEWQ
RIAVMRALSK PYSLFIADEP TANIDPIEEY NIFQTIIKKT KGIRLIITHR MGSIKNCDEI
FVLRNGKIEI SGPHSEIMQK SEYYASLYNS QKSMYTHIEK GEANEN
|
|---|
| |