Gene TDE0002 details

Gene Information

• Locus tag: TDE0002
• Symbol: gyrB
• ID: 2741616
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1684
• End bp: 3600
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637158871
• Product: DNA gyrase, B subunit
• Protein accession: NP_970619
• Protein GI: 42525521
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAGT CAAATTATTC GGCAAATAAT ATTACGGTTT TAAAGGGTTT GGAAGCGGTC 
AGAAAAAGAC CGGGTATGTA TATAGGTTCA ACGGGGCCGG ACGGTCTTCA CCATCTAGTT 
TATGAGGTTG TAGATAACTG TATAGACGAG GCTATGGCGG GTTTTTGCGA TAAAATTTTG 
GTAGTTCTTG AGCCGAACGA TATTGTCCGT GTAGAGGACA ATGGCCGAGG TATTCCTGTA 
GATATTCACC CTACCGAAAA AATAAGTGCC TTGGAGCTGG TTTTAACCCG CCTTCATGCC 
GGCGGTAAGT TCGATAAGGG TTCTTACAAG GTTTCAGGCG GTTTGCACGG AGTAGGCGTT 
TCGGTTGTAA ACGCTCTTTC CGTTTGGATG GAGGCCAAGG TCTACAAGGA CGGCTTTGAG 
CACTATGCAA AGTTTGAAAA AGGCTCCATT CTTGAGCCCG TAAAAAAAAT AGGGGAAACC 
GAAAAAAGCG GTACCGTTAT AAGATGGGCA GTGGATCCTT CTATCTTTAC CGAAACCACC 
GTATACAATT TTGAAGTGCT TGCAACCCGT TTAAGGGAAT TGGCCTTCTT AAACAGCAAA 
ATTTCCATTA CGATGAGGGA TGAGCGCCTT TCTACCCCAA AAGAGGTTAC CTTCGCCTTT 
GAGGGTGGAA TATCGCAGTT TGTTTCTTAT TTGAACGAAT CAAAACAAGT TTTTCCGAAA 
AGTCCCGTTT TTATCGAAGG CGAAAAAAAC GATATTCTCT GCGAGGTTGC CATTCAATAC 
AATGACGGCT ATAACGAAAA CCTCCTTTCC TTCGTAAACG ATATAAACAC CCGCGAAGGG 
GGCACTCACC TTGAAGGTTT TAAAACAGCC CTTACCCGTG TAATGAACGA CTTTTTAAAG 
AAGTATCCTA AGCTTGTAAA AAAGATGGAT AAGGAAGAAA AGCTTACCGG AGAAGATGTC 
CGTGCTGGTC TTACCGCCAT CGTTTCAGTG AAGGTTCCCG AACCTCAGTT TGAAGGGCAA 
ACAAAAACAA AGTTGGGCAA CAGCGATGTT CGGGGTATAG TTGACTCATT TGTAAACGAA 
AAGCTTACCT TATTTTTTGA GCAAAATCCT AATGAGGTCG AAAAGGTTTT GGAAAAATGT 
GTCGCTGAGG CCGCCGCCCG AATTGCTGCC AGAAGAGCAA AGGAAGCTAC CAGAAGAAAA 
AGCGGTTTGG ACAGTTTCGG CCTTCCGGGA AAACTTGCAG ACTGTTCTTT AAAAGACCCG 
GAGTCTTGCG AAGTTTACAT AGTTGAGGGA GACTCTGCAG GCGGCTCTGC AAAAAAAGGA 
AGGGACAGCA AGACGCAGGC TATCCTGCCC CTCTGGGGAA AAATGCTCAA CGTCGAAAAA 
ACCCGCCTAG ACAAGGTTGT AAACAACGAA AAGCTTCAGC CCATTATTGC GACCCTCGGC 
ACCGGCATAG GCAAGGATTT TAATATAGAA AAATTACGCT ATCACAAGGT TATAATAATG 
GCCGATGCCG ACGTTGACGG CTCCCATATC CGGACTCTTC TTTTAACATT CTTTTTTAGG 
TACATGCCTC AGGTTATCGA AAAGGGGCAC GTTTACCTTG CGATGCCGCC TCTTTATAAA 
ATTTCACACA ATAAAAAAGA ATGGTATGTT TATAATGATG ATGAAAGAGA TTCCGTTTTG 
GATCAAATAG GACGCGGAAA CAATGCTGCT GTTCAGCGCT ACAAGGGCTT GGGCGAAATG 
GACGGGACCC AGCTTTGGGA AACAACTATG GACCCGGCAA GACGGAAAAT GATGAGGGTT 
ACCCTTCCGG ATGCCGTCGA AGCCGACAGA ATTTTCAGCA CGCTGATGGG AGAAGAAGTC 
GAACCCCGCC GAAAGTTCAT CGAAGAAAAC GCCGTCTATG CAAATCTGGA TGTGTGA 

 

Protein sequence

MTKSNYSANN ITVLKGLEAV RKRPGMYIGS TGPDGLHHLV YEVVDNCIDE AMAGFCDKIL 
VVLEPNDIVR VEDNGRGIPV DIHPTEKISA LELVLTRLHA GGKFDKGSYK VSGGLHGVGV 
SVVNALSVWM EAKVYKDGFE HYAKFEKGSI LEPVKKIGET EKSGTVIRWA VDPSIFTETT 
VYNFEVLATR LRELAFLNSK ISITMRDERL STPKEVTFAF EGGISQFVSY LNESKQVFPK 
SPVFIEGEKN DILCEVAIQY NDGYNENLLS FVNDINTREG GTHLEGFKTA LTRVMNDFLK 
KYPKLVKKMD KEEKLTGEDV RAGLTAIVSV KVPEPQFEGQ TKTKLGNSDV RGIVDSFVNE 
KLTLFFEQNP NEVEKVLEKC VAEAAARIAA RRAKEATRRK SGLDSFGLPG KLADCSLKDP 
ESCEVYIVEG DSAGGSAKKG RDSKTQAILP LWGKMLNVEK TRLDKVVNNE KLQPIIATLG 
TGIGKDFNIE KLRYHKVIIM ADADVDGSHI RTLLLTFFFR YMPQVIEKGH VYLAMPPLYK 
ISHNKKEWYV YNDDERDSVL DQIGRGNNAA VQRYKGLGEM DGTQLWETTM DPARRKMMRV 
TLPDAVEADR IFSTLMGEEV EPRRKFIEEN AVYANLDV