Gene PG1774 details

Gene Information

• Locus tag: PG1774
• Symbol: mfd
• ID: 2552401
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: -
• Start bp: 1861269
• End bp: 1864637
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637150383
• Product: transcription-repair coupling factor
• Protein accession: NP_905876
• Protein GI: 34541397
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1197] Transcription-repair coupling factor (superfamily II helicase)
• TIGRFAM ID: [TIGR00580] transcription-repair coupling factor (mfd)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCAAAT CTCCCCAACC AATCGATATT CTTTCCCTCT TTCGCCGGCA CAATGGTGTG 
CAGGCTTTGA TGAAAGCCCT CGACCGAGAG AAGTGCGTAG CTCTCGACGG GCTTTGCGGG 
TCGTCGGCAG CTCTTATAGT GAAACTGCTG CACGAATCCG GTCGCCCTGT CCTTTGCATT 
GCTTCGGATA TGGAAGAAGC CGGCTATCTC TTCTCCGATT TGGAGCAACT CGGAGGAGAG 
GGTAGTGCAC TTTTTTTCCC TTCCTCCTAT AAGCGTGCTA TCAAATACGG GCATACCGAT 
GCGGCACAAC AGGTGCTTCG TGCCGAGGCT TTGGCCGCTC TTTCGATGGA GGGTAGCTGT 
CCGCTTGTCG TCTCTTATCC CGAAGCCGTG GCCGAACGCG TGGTCGCCGG CGATATACTG 
GAGAAAGAGA TGCACAGCAT CCGTCAGGGA GACAGGTTGG ATCGGGATTT TCTCAGAGAT 
CTTCTATTGG AATGGGGCTT CGAACGAACC GATTACGTTT ATGAGCCGGG GCAATTTGCC 
GTACGAGGCA GTTTGCTGGA TGTATTTTCT TTCAGTCGCG AGCTACCGGT ACGTATCGAC 
TTCTTCGACG ACGAGATAGA AAGCATCCGT CTCTTCGAGG TGGAGAGTCA GCTCTCGGTG 
GGGACGCTGT CGGAGGTCGT ACTGATGCCT GATGTGGCAG GAGATGTTCG TGCCGAGGAG 
TGTTTGCTCG GTTTATTCCC GAAGAATACG ATCATCGTAT TGCCGGACAG ACCGTTTTTG 
GAGGATCGTC TGCAAATGGT ATTTACCGAT GCTCCGCTCT TCGATGACGG CGAAGGATTC 
GAATCGCTCG TAGCCATGCA GGAGCGGCTC ACATCGCCTA AGGAGCTGAT GGATAAATTG 
AATGACTTCA CGACCATCGC CACCGGCAGC GGCAGGAGCG GCAATTACCG TATCGGCTTC 
AAGACCCAAC CGCAGCCTTT GTTCCACAAG AATTTCGATC TGCTCATCGA TCAACTGGAG 
CAATGGCGAG ATGCCGGCTA CAGAATGCTT TTGGCCACAG CCTCGGATAA GCAATACGAG 
AGAGTGGAAG AGATCCTTTC CGAGCGTGGA AGCTCTTCGC TCCTTCCGAA AAGAGTATCG 
CTCACCTTAC ATGAGGGTTT TTCGGACGAA GCTCTTCGGA TCGTTCTGCT TACGGATCAC 
CAGCTTTTCG ATCGTTACCA CAAATACAAT CTCAAAAGCG ACAAAGCCCG TTCGGGGAAA 
GTGACCCTCT CACTGAAGGA GCTGAACCAA TTCTCTCAAG GCGACTATAT CGTGCATATC 
GATCACGGTA TCGGCCGGTT CGGAGGCCTT ATCACGACCG ATGTGGGAGG GAAGCGGCAG 
GAAGTAATCA AACTCATTTA CCGAAATAAC GATATAATAT TCGTCAATCT GCACAGCCTC 
CATAAGTTGT CCAAATACAA AGGTGGTGAC AGTGATGCGC AGGTAGAACT GAGTCGTCTC 
GGGACGGGAG CCTGGCAAAA GCTCAAAGAG AGGACCAAAA AGCGTGTCAA GGATATTGCT 
CGCGATCTGA TCCGGCTCTA TGCCCAAAGG AAAGAAGAGC GAGGCTTTGC ATTCAGTCCG 
GACAGCTACC TACAGCACGA ATTGGAAGCC TCTTTCCTGT ACGAAGATAC GCCCGATCAG 
GAGCGTGCCA CGGCAGAGGT AAAAGCCGAT ATGGAAAGCG ATCGTCCGAT GGATCGGCTT 
ATCTGCGGCG ATGTCGGTTT CGGCAAGACG GAAGTGGCTG TTCGTGCCGC ATTCAAAGCC 
GCCACAGACG GCAAACAGGT AGCGATACTG GTGCCGACTA CCGTACTGGC CTATCAGCAC 
TATCAGACGT TCAGGGACAG ATTGCAAAAT TTCCCCGTGC GTATCGAATA CATATCCCGC 
GCCCGTTCGG CCAAGGATAT TAAAGCGATT CTGCACGATC TGGCAGAAGG TCGGATCGAT 
ATAATTATAG GTACGCACAG GCTCGTGAGC AACGATATCA GATTCCATGA CCTCGGCCTC 
CTTGTGATCG ATGAAGAACA GAAATTCGGT GTGGCAGTAA AAGAAAAGCT GCGCAAACTA 
CAGGTCAATG TCGATACGCT GACCATGTCT GCTACACCTA TCCCCCGTAC TTTGCAATTC 
TCTCTGATGG GAGCACGCGA CCTCTCGAAT ATCAACACCC CACCGCCGAA TCGCTATCCC 
GTTGCCACCG AACTGGCACG ATTCAGCCCC GACATTGTTC GGGAAGCTGT CAATTTCGAG 
ATGTCCCGCA ACGGACAGGT CTTTATCGTC CACAACCGAA TAGATAATAT AGAAGAGATC 
GCCGGCATAG TACAACGTGA AGTCCCCGAT GCACGCGTGG CAGTGGGGCA TGGCCGTATG 
TCGCCCACAG AACTGGAACG ACTTATCCTC GATTTTGTTC ATTACGAATA TGATGTGTTG 
GTCGCAACTA CAATCATTGA AAATGGTATC GATGTGCCCA ATGCCAATAC CATTATCATT 
GACGATGCCC ACCGATACGG TCTGAGTGAG TTGCACCAGC TTCGCGGACG TGTGGGACGG 
AGCAACAGGA AAGCCTTTTG CTATCTTTTG AGTCCGCCGC TCAGTGTCCT GAGCGACGAT 
TCGCGCCGTC GGCTCCAAGC CATAGAGAAC TTCAGCGACC TCGGCAGCGG TATTCGCATT 
GCTCTTCAGG ATTTGGATAT ACGTGGTGCC GGCAATGTAC TCGGTGCCGA GCAGAGCGGA 
TTCATTGCCG ATTTGGGATA TGAGACGTAT AGTAAGGTTT TTAATGAAGC CGTTTCCGAA 
CTCAAAGCGG ATGAGTTTGC CGATCTTTAT GCAGAGAGCC AAGAAGCTAT TCCTTCAGCT 
TCCCGGTTTG TAGTGGAGAC AACGGTCGAG AGCGATTTGG AACTTTCCTT CCCCGAAGAA 
TATGTGCCGT TGGATTCGGA ACGCATTCTT CTTTATCGGG AGTTGGACAA TCTCTCCACG 
GACGAGGAGC TCGATGCATT CCGGCGCCGT ATGCAGGATC GTTTCGGTAA AATTCCGCCG 
GAGGGAGAGG AGTTGATACG GGTACCTCGC CTGCGACGCC TCGGCCGTTC GCTCGGTATA 
GAGAAGATCG TATTGCGTGG GGACCAGATG AGTTTCCATC TGGTCGGCAA GGAAGACAGC 
CCTTACTATC AGAGCGAAGT CTTTGGCATG TTGTTGGAAT ATATCGCAGC GCACACACGT 
CGGTGCGAGA TTCGTCAGTC CGGAGGAAAG AGGATCGTTC GCTTGCGCGA GGTGCCCGAT 
GTGCTCACCG CTTGTGAACT CTGTACAGCC ATTTCCACTC GATCGTCAGC GGAAAGGATA 
GAATTGTAG 

 

Protein sequence

MIKSPQPIDI LSLFRRHNGV QALMKALDRE KCVALDGLCG SSAALIVKLL HESGRPVLCI 
ASDMEEAGYL FSDLEQLGGE GSALFFPSSY KRAIKYGHTD AAQQVLRAEA LAALSMEGSC 
PLVVSYPEAV AERVVAGDIL EKEMHSIRQG DRLDRDFLRD LLLEWGFERT DYVYEPGQFA 
VRGSLLDVFS FSRELPVRID FFDDEIESIR LFEVESQLSV GTLSEVVLMP DVAGDVRAEE 
CLLGLFPKNT IIVLPDRPFL EDRLQMVFTD APLFDDGEGF ESLVAMQERL TSPKELMDKL 
NDFTTIATGS GRSGNYRIGF KTQPQPLFHK NFDLLIDQLE QWRDAGYRML LATASDKQYE 
RVEEILSERG SSSLLPKRVS LTLHEGFSDE ALRIVLLTDH QLFDRYHKYN LKSDKARSGK 
VTLSLKELNQ FSQGDYIVHI DHGIGRFGGL ITTDVGGKRQ EVIKLIYRNN DIIFVNLHSL 
HKLSKYKGGD SDAQVELSRL GTGAWQKLKE RTKKRVKDIA RDLIRLYAQR KEERGFAFSP 
DSYLQHELEA SFLYEDTPDQ ERATAEVKAD MESDRPMDRL ICGDVGFGKT EVAVRAAFKA 
ATDGKQVAIL VPTTVLAYQH YQTFRDRLQN FPVRIEYISR ARSAKDIKAI LHDLAEGRID 
IIIGTHRLVS NDIRFHDLGL LVIDEEQKFG VAVKEKLRKL QVNVDTLTMS ATPIPRTLQF 
SLMGARDLSN INTPPPNRYP VATELARFSP DIVREAVNFE MSRNGQVFIV HNRIDNIEEI 
AGIVQREVPD ARVAVGHGRM SPTELERLIL DFVHYEYDVL VATTIIENGI DVPNANTIII 
DDAHRYGLSE LHQLRGRVGR SNRKAFCYLL SPPLSVLSDD SRRRLQAIEN FSDLGSGIRI 
ALQDLDIRGA GNVLGAEQSG FIADLGYETY SKVFNEAVSE LKADEFADLY AESQEAIPSA 
SRFVVETTVE SDLELSFPEE YVPLDSERIL LYRELDNLST DEELDAFRRR MQDRFGKIPP 
EGEELIRVPR LRRLGRSLGI EKIVLRGDQM SFHLVGKEDS PYYQSEVFGM LLEYIAAHTR 
RCEIRQSGGK RIVRLREVPD VLTACELCTA ISTRSSAERI EL