| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1105 |
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| Symbol | rpoN |
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| ID | 2553336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | - |
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| Start bp | 1175806 |
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| End bp | 1177263 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637149805 |
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| Product | RNA polymerase sigma-54 factor |
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| Protein accession | NP_905317 |
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| Protein GI | 34540838 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.642604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAAGC AAACCCTTGC TCAAAGGCAG CAACAAAATC TCTCTGTACA ACAGATCCAG
CAAATCAAAC TCTTGGAGCT TCCGGCCATT GAGTTAGAAG AGAGGATACA GAAAGAACTG
GAGGCCAACC CTGCTTTGGA AGAAGGAGCG TACGATGAGG AGGTGGCCGG CAGTGCGGAT
GGAACCGAAG ACAATCTTAT GGGGGACGAC ACCTCCGACC TCTCTTTGGG TGATTATCGT
ACCGAGGAAG ATATTCCTGA ATACAAATTG CGTGAAATAC AGGATCGTAA CAGCCGACGA
GAAGAAATAC CTTTTTCTGC AGCTGTACCT TCGATCAACG ATCGCTTGGT CGAACAGTTG
AAGTTCCTGC CTCTGACGGA TCGACAGCAA CAGCTTGCTC CCTATATCAT TGGTAACATA
GAAGAAGATG GCTACCTGCA TCGTGATTTG GAGGAGATTC TGGACGATCT CGCTTTCCGT
GCCGGTATCG AGGCGGACAA AAAGGAAGTA GAAGAAGTGA TAGGATTGGT ACAAAGTCTC
GATCCCCCCG GTATCTGTGC CAGAGACCTC AAAGAGTGTT TGCTGCTCCA ATTGGAACGA
TTGCCGGATA CGACAGCTCG GCAGACAGCC CTCCATATTC TTACGAACCA TTATGACGAC
TTTGTCTCCA AACGGTTCGA GCAGTTGCAG GAGGGAGCAT CCCTTTCCGA TTCGGAAATG
AAGGAGGCCT TCGAACTGAT CATGCAGCTC AATCCCAAAC CCGCTAACGG ATGGGGAGAT
GACGCCGAAG CAGCCATGAA CAGGGTACAT CCCGATTTCA TCGTCGAGCG CATGGGGGAC
GATCTGGTCG TGTCGCTTAC TCGTGGTCGT GATATTCAGC CCTTGCGCGT CAGTCCGGTC
TATCAGGAGA TGATGCAGGA TTATCAAAGC TCTGCTAAAA ACCGCTCACG CGAACGCAAA
CAAACACTTC TTTTCGTCAA GCAGAAAGTG GATCAAGCTC AATGGTTCAT CGAAGCCCTT
CGTCAGCGAC GGGAAACGCT ACAGCGGACG ATGGAGGCCA TAGTACGGCT ACAGGATGCT
TACTTCCGAA GTGGAGAACT TGCCGATCTG AAGCCTATGA TTCTGAAAGA TGTGGCTGAT
CCGACGGGTT ATGATGTCAG TACGATCTCT CGGGTGAGCA ATAGCAAATA TGTACAGACC
GACTTCGGAA TCTTCTCGCT GAAGCACTTT TTCAGTGATG GCACTGTCAA CGATAAGGGA
GAGGAAGTGT CCACACGTGA GGTCAAACGA GTGCTTGCCG AAGCCATCGA CTCCGAGGAT
AAGAGATCTC CCCTGAATGA TACCGAGTTG GCTGATGTTT TGGCCGAAAA CGGTTATCGA
CTGGCTCGTC GTACCGTTGC CAAGTATCGG GAGCAGCTCG GTTATCCTAC AGCGAGGATG
CGGAAAGAAG TCGTATAG
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| Protein sequence | MLKQTLAQRQ QQNLSVQQIQ QIKLLELPAI ELEERIQKEL EANPALEEGA YDEEVAGSAD
GTEDNLMGDD TSDLSLGDYR TEEDIPEYKL REIQDRNSRR EEIPFSAAVP SINDRLVEQL
KFLPLTDRQQ QLAPYIIGNI EEDGYLHRDL EEILDDLAFR AGIEADKKEV EEVIGLVQSL
DPPGICARDL KECLLLQLER LPDTTARQTA LHILTNHYDD FVSKRFEQLQ EGASLSDSEM
KEAFELIMQL NPKPANGWGD DAEAAMNRVH PDFIVERMGD DLVVSLTRGR DIQPLRVSPV
YQEMMQDYQS SAKNRSRERK QTLLFVKQKV DQAQWFIEAL RQRRETLQRT MEAIVRLQDA
YFRSGELADL KPMILKDVAD PTGYDVSTIS RVSNSKYVQT DFGIFSLKHF FSDGTVNDKG
EEVSTREVKR VLAEAIDSED KRSPLNDTEL ADVLAENGYR LARRTVAKYR EQLGYPTARM
RKEVV
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