| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5166 |
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| Symbol | |
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| ID | 1043885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5891784 |
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| End bp | 5892614 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637148565 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_747267 |
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| Protein GI | 26991842 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.648773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTTC AAAACCCGTT CGGCCAGCCG CTACTGACCT TTCCCGAGCT GGACAAGAGC
CCGCTGAGCA TTCGTGCCAA GGCGCTGGTG TTTATCGACC CGCGCTCGCA GCAGCTGCGC
GAGGACCTTG AGCGCCTGGC GCCACAACCT TTGCCGGTGC TGATCCGTGG CGAAACCGGC
ACCGGCAAGG AGCTGCTGGC CCGGCAGATC CACCGTACCA GCGACCGTGG AGGGTTGTTC
GTGTCGGTCA ACTGCGCGGC CATCAGCCCC ACCTACGCCG ATGCCGAGCT GTTTGGCTAT
AGCGCCGGCA GCCATGGCGG TACGGCCAGC AGCCGCGCCG GCTGGTTCGG TTCGGCCAGC
GGCGGCACCT TGTACCTGGA CGAGATTGCC GACTTGCCGT TGGCCATCCA GGGCAAGCTG
CTGGCGGCCC TGGAAAACCG CGAGGTCACT CGGGTGGGCG CGCAGCAGCC ACAGCCGGTG
GATGTGCGTC TGGTAGCCGC CACCAGCATC GACCTGGCCC GTGTGGTGCG TGCAGGGCGC
TTCAACGAGC GCCTGTACCA GTATTTGCGC GAGGGCGCGC TGGAACTGCC GCCGCTGCGC
GAGCGGCCGG GCGATATCCT GCCGCTGGCC GAGTACTTTG CGGGCATCTA CAGCGTGCGC
CTGCAACGGC CTGTGCCCTT GGTGAGCGAG GCGGCGCAGC GGGTTCTGGA GGGGCATTTC
TGGCCCGGCA ATACCCGCGA ACTGGAGAAC GTCATCCACT TTGCATTGCT GGTCAATGAC
GGCGAAGAGA TCCTGCCCGA AGACCTCGAC CTGCCTGACC CCGCACGTTA G
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| Protein sequence | MTFQNPFGQP LLTFPELDKS PLSIRAKALV FIDPRSQQLR EDLERLAPQP LPVLIRGETG
TGKELLARQI HRTSDRGGLF VSVNCAAISP TYADAELFGY SAGSHGGTAS SRAGWFGSAS
GGTLYLDEIA DLPLAIQGKL LAALENREVT RVGAQQPQPV DVRLVAATSI DLARVVRAGR
FNERLYQYLR EGALELPPLR ERPGDILPLA EYFAGIYSVR LQRPVPLVSE AAQRVLEGHF
WPGNTRELEN VIHFALLVND GEEILPEDLD LPDPAR
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