| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4559 |
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| Symbol | def |
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| ID | 1046247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5180448 |
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| End bp | 5180984 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637147957 |
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| Product | peptide deformylase |
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| Protein accession | NP_746668 |
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| Protein GI | 26991243 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.865436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCGTG ACATTCTCAA GATGGGCGAC GAACGCCTGC TGCGCATCGC TCCGCCAGTG
CCCGAGCACA TGCTTGGCAG TGCCGAACTG CAGCAACTGA TCGACGACAT GTTCGAAACC
ATGCGTCACG TCGGCGGTGT GGGCCTGGCC GCCCCGCAGG TCGGCATCGA CCTGCAGTTG
GTGATCTTCG GCTTCGAGCG CAGCGAGCGA TACCCCGATG CCGAGGCGGT GCCGCAGACC
ATTTTGCTGA ATCCGGTCAT CACCCCGACC TCCAGCGAGG TCGAGGACGG CTGGGAGGGG
TGTCTGTCGG TGCCTGGCTT GCGCGGCGTG GTGCCGCGCT TCAAGCATAT CTGCTACCAA
GGGATCGACC CCCAGGGCAG CCCGATCAAC CGCTTTGCCG ATGGCTTCCA TGCACGAGTG
GTGCAACACG AGTGCGACCA CTTGATCGGC CGGCTATACC CCTCGCGCAT CCAGGACTTT
GCCAAGTTCG GCTACACCGA GGTGCTGTTC CCTGGGCTCG AGGTCAGCGA GGACTGA
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| Protein sequence | MIRDILKMGD ERLLRIAPPV PEHMLGSAEL QQLIDDMFET MRHVGGVGLA APQVGIDLQL
VIFGFERSER YPDAEAVPQT ILLNPVITPT SSEVEDGWEG CLSVPGLRGV VPRFKHICYQ
GIDPQGSPIN RFADGFHARV VQHECDHLIG RLYPSRIQDF AKFGYTEVLF PGLEVSED
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