| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4216 |
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| Symbol | pvdE |
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| ID | 1042520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4763603 |
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| End bp | 4765261 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637147615 |
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| Product | cyclic peptide transporter |
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| Protein accession | NP_746333 |
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| Protein GI | 26990908 |
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| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGTA AACCACGTGG CGCCGTCAGC GAACTGTTCG GCCTGCTCAA ACCCTTCTGG
CCCCTGGTGA CGGTTTCGAT CATCCTGGGC ATGGTCGGTG GCCTCAGTGT CACCGCCCTG
CTGGCGACCA TCAACTCGGC CCTGCACAGC GACACCGGCC TGACTCAAGG CGTGGTCCTG
GGTTTTGCCG GGCTGTGCCT GCTGGCGCTG TTCAGCTCGA TCTGCTCGGA CATGGGCACC
AACTGGGTCG GCCAGCACAT CATCGCGCGC CTGCGCCGTG AGCTGGGCGA GAAGGTGCTG
GCAGCGCCGA TCGACCAGAT CGAACGCTAC CGCAGCCATC GCCTCATCCC CGTGCTGACC
CATGACGTCG ACACCATCAG CGACTTCGCC TTCGTCTTCG CGCCCCTGGC CGTTTCGCTC
ACCGTCACCG TGGGCTGCCT GGGCTATCTG GCGCACCTGT CGATACCGAT GTTCCTGGTG
ATCCTGGTGG CCATCGGCAT CGGCTCGGTC ATGCAGTTCG TTGCCCGCTC GTGGGGTGTG
CGCGGCTTCG AAAGCGCCCG AGAAGCCGAG GATGAACTGC AAAAGCATTA CAGCGCGATC
GCCGAAGGTG CCAAGGAACT GCGCATTCAC CGCCCACGCC GCAAACGCAT GTTCCAGCAC
GGCATCCAGG ACACCGCCAA CCGTATTTGC GCCACCCAGG TACGCTCGAT CAACACCTTC
GTAATCGCCA AGACCCTGGG CTCGATGCTG TTCTTCGTGG TCATCGCCGT GGCCCTGGCC
ATGCAGTCGC TGTGGCCCAC AGGCGACAAG AGCGTCACCA GCGGTTTCGT GCTGGTGCTG
CTGTACATGA AAGGCCCGCT GGAACACCTG ATCAGCACCC TGCCGATCAT CAGCAAGGCC
CAGATCGCCT TCCGCCGCAT CGCCGAACTG TCACGCCAGT TCTCATCGCC CGAGCCGCAC
TTGCTGCTGG ATGACACCCG CGCCGCCGAC AAGGCCCTGC ACACCCTGCA GCTGCAGGAC
GTCAGCTACA CCTTCCCCCG CGTGGAAGGC AGTGAGCCGT TTCATCTGGG TCCGGTGAAC
CTGAGCATCA AGCAAGGCGA CATCGTGTTC ATCGTCGGCG AAAACGGTTG CGGCAAGACC
ACCCTTATCA AGCTGCTGCT CGGCCTATAC GCACCTCAGC AAGGCACGAT CAGCCTCGAC
GGCAAGCCGG TGACGGCCGA AAACCGTGAC GACTACCGGC AGCTGTTCAC CACCATCTTC
GCCGACTACT ACCTGTTCGA CGATGTCATC CAGGGTGACC GGCCAGTACC TGCCGACGCC
AGTCGCTACC TGGAGCGCCT GGAGATCGCT CACAAGGTCA GCATCCGTGA CGGCGTGTTC
AGCACCACCG ACCTGTCCAC TGGCCAACGC AAGCGCCTGG CGCTAGTGAG CGCCTGGCTG
GAGGAGCGCC CGGTGCTGGT GTTCGACGAA TGGGCCGCCG ACCAGGATCC GACGTTCCGG
CGAATTTTCT ACACAGAGCT GCTGCCGGAC CTCAAGCGCC TGGGCAAGAC CATCATCGTG
ATAAGCCACG ACGACCGCTA CTTCGACGTC GCCGACCAGC TCATCCACAT GGCGGCAGGC
AAGGTCCAAC AGGAGAACCG CGTCGCAGAT TGCATTTAA
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| Protein sequence | MTSKPRGAVS ELFGLLKPFW PLVTVSIILG MVGGLSVTAL LATINSALHS DTGLTQGVVL
GFAGLCLLAL FSSICSDMGT NWVGQHIIAR LRRELGEKVL AAPIDQIERY RSHRLIPVLT
HDVDTISDFA FVFAPLAVSL TVTVGCLGYL AHLSIPMFLV ILVAIGIGSV MQFVARSWGV
RGFESAREAE DELQKHYSAI AEGAKELRIH RPRRKRMFQH GIQDTANRIC ATQVRSINTF
VIAKTLGSML FFVVIAVALA MQSLWPTGDK SVTSGFVLVL LYMKGPLEHL ISTLPIISKA
QIAFRRIAEL SRQFSSPEPH LLLDDTRAAD KALHTLQLQD VSYTFPRVEG SEPFHLGPVN
LSIKQGDIVF IVGENGCGKT TLIKLLLGLY APQQGTISLD GKPVTAENRD DYRQLFTTIF
ADYYLFDDVI QGDRPVPADA SRYLERLEIA HKVSIRDGVF STTDLSTGQR KRLALVSAWL
EERPVLVFDE WAADQDPTFR RIFYTELLPD LKRLGKTIIV ISHDDRYFDV ADQLIHMAAG
KVQQENRVAD CI
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