| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4211 |
|---|
| Symbol | |
|---|
| ID | 1045923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4756728 |
|---|
| End bp | 4758140 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637147610 |
|---|
| Product | RND efflux transporter |
|---|
| Protein accession | NP_746328 |
|---|
| Protein GI | 26990903 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGC CACGCCACCT TTGCCTGCTG CCCCTGAGCT TGTCACTCCT CGCCTGCTCC
ACGCCAACGC CGCCAACTAT GGGCATAGCC CCGCCCGCCG GTTGGCAAAG CCCTACTGCG
AGCAAGGCAC AGGCACTGCC TGATCAACGC TGGTGGAAGG CCTTCGCCAG CCCAGAGCTT
GACCAGTTGA TCGAGATTGC CCGAAACAAC AGCCACGACC TGGCCGCGGC TGCAGCCCGG
GTACGCCAGG CCCAGGCGCG GGCAGTAATC GCCGGCGCGC CGCTGCTGCC TGAGGTGCAG
TTCGGCCTGG ATGCCAGCCG CCAGCGCCTG CTGCGCGGCG AGGGCAACGA TCAGCTCGAT
GCCAGCAGCA GTGAGCGCAC CAGCACCTCG TTCGATGCCA ACCTCAGCGC CAGCTACGAA
ATCGATTTCT GGGGCGGCCT GCGCAGTGCC CGCGACAGCG CCTTGCGCAG CCTCGACGCC
AGCCGCTTGG ACCGCCAGAC CGTGAAGCTG ACCCTGTTCG GCAGCGTCGC CGACACTTAC
CTGCAAAGCC TGGCTCTCAA AGAACAGCTG CGTATAGCCC AACTCAACCT GCGCAACGCC
CAAGCGGTGC TGAGCCTGGT CGAAGCCCGC CAGCAGTCCG GCTCCAGCAC CCAACTCGAG
CTGGCCCAGC AGCGCAGCCT GGTGGCCGCT CAGCAACGCC AACTGCCGCT ACTTGAGCAG
CAGTGGCAAG ACACCCAGGT CACCCTGGCA ACGCTACTGG GGCTACCGGT GCAACAACTG
CCGACCAGTA CCGCAGCATT CGCTGACCTG CGCTGGCCTC GCATCGCCAG TGGCGTACCC
AGTGAGCTGC TGGCGCGTCG CCCCGACATC GCAGCCGCCG AGGCGCGCCT GGCCGCGGCC
AGCGCCAATG TGCAGGTCGC CAGGGCAGCC CTGCTGCCCA AACTCACGCT GGGCGTGGAA
TTCGGCAGCG GCGCCAGCAC CTTCGCGCAG ATTTTCGACA GCCCCTACTA CACCCTGACC
AGTGGCCTGG TCGCCCCGGT GTTCAACCGA GGCCGTCTGC GCGCCGCGCA GCAACTGGCC
GAGGCCGAAC AGGAAGAATT GCTGGAGGCT TACCGCACCA GCATCCTGGC CGCTTTCGCC
GATGTAGAAA AAGCACTGAA CGCCACCCAA GGGGTGGACC GTCAACGCCA GTGGCAGGAT
CAGGAAGTGG AACAATCACG CATCGCCTTC CAGCTGGCCG AGCGCCGCTA CCGCGCCGGC
GCCGAGACCT TGCTGACCGT GCTCGACACC CAGCGCAGCC TGTACCAGGC CCAGGACCAG
CAGGCCCGCC TGCAGCTAAG CCAACTGCAG GCCAGCGTGG CCCTTTACAA AGCCTTGGGC
GGTGGCTGGC AAGCGGATAG CCCGACGCGC TAG
|
|---|
| Protein sequence | MTLPRHLCLL PLSLSLLACS TPTPPTMGIA PPAGWQSPTA SKAQALPDQR WWKAFASPEL
DQLIEIARNN SHDLAAAAAR VRQAQARAVI AGAPLLPEVQ FGLDASRQRL LRGEGNDQLD
ASSSERTSTS FDANLSASYE IDFWGGLRSA RDSALRSLDA SRLDRQTVKL TLFGSVADTY
LQSLALKEQL RIAQLNLRNA QAVLSLVEAR QQSGSSTQLE LAQQRSLVAA QQRQLPLLEQ
QWQDTQVTLA TLLGLPVQQL PTSTAAFADL RWPRIASGVP SELLARRPDI AAAEARLAAA
SANVQVARAA LLPKLTLGVE FGSGASTFAQ IFDSPYYTLT SGLVAPVFNR GRLRAAQQLA
EAEQEELLEA YRTSILAAFA DVEKALNATQ GVDRQRQWQD QEVEQSRIAF QLAERRYRAG
AETLLTVLDT QRSLYQAQDQ QARLQLSQLQ ASVALYKALG GGWQADSPTR
|
|---|
| |