| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4113 |
|---|
| Symbol | |
|---|
| ID | 1042241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4649201 |
|---|
| End bp | 4650910 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147514 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_746232 |
|---|
| Protein GI | 26990807 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1404] Subtilisin-like serine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.233114 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGTG TCCTGATCTT GCTGTTATGG CTTTGCAGTC TTGGAGCACA GGCTGCAGCA
GACACGCTGC GCATCAAGCA GCTGCAGCGT TGCGGCGACT TGTTCAGCGA TAGCCAGCAG
CGATGGTGCC TGTGTGCCGA AGGGCTCCGG GCAAATCTGC CAACGGTATG GCTCGGCGGT
ACGCGGCTGT CAGAAGCCGA TATCGAGCGC CAAGGTGACC GGCTAACGCT GAAACTGGCG
AGACAAGCCC AGCGCAGCGC CCCGCTCTGG CTGGCCGATG GCGGCCGCAC CAGCAACCCG
GTATGGCTGA CCCGCCAGCG CAGTCATGTG ATCGCCGCAG GGCCTGATGA AGTGGCGAAG
AACATGGATG GCCTGACCAC TTATGTCGAT CTGGTCAGCT TGTTGATCGA AGAAAAATAC
GACGGCCTCG GCGAGGCCCG GCGCATCGCC GGTAAATACG GCGCCCAGGT TGTCGGTGCC
ATACCGCCGC TGAATGTCTA CCAGCTGCGC TTGCCGGTAG AGGACCTGGT GCAGCGCGAT
GCGATGGTCC TGCGCATGGG TAGTGAAGTC AGCGTGGATG CCGTGATTGT CGAAGAATCC
GCCCCCGAGC GCGGGGAGGA GGGCAATGGG CGCGGAACCC GGGCCATCGA CCAGGCGGAC
GAATGGGCCG CCAACCGCTT CATGGACGCG CTGTATTTCT ACCGGCGCCG GATTGCCGCC
TCAGGCTTGC CGGTGAAGCC CGTGCGGGTC GGGGTAATCG AGCGCGAAGT GGACTTTGAC
GCCCCGGGGT TCAGCCATTA TCGAGGGGGC TGCGAACAAG GCCAGACATG CCTCTACGCT
CGCGACGGTA ACCGCCCGGC AAGCCACGGC AGCCATGTCG CAGGCATTCT CGCTGCGCAG
GGTGAGGGCT TTTTGCCGGG GCTGGGCAAG CACAGCCCTG GCTTCGAGGT GATGGTAGAG
CGCAACTCGG ATGCCGGTAT CACCGCCAAC ATCGCTGCCT CGGTGAACCT GGTCGAAGAT
GGCGTGCGGG TGCTGAACTG GAGCTGGGGC ATTCACCGGG TCGGCGCGCG CGATGTCAAC
GGTGATGAGG TTGATTCGCT GGTGCGTTCC GGGCTGGCAA TGAGTGGCTA CGAGGAGTTG
CTTGAGGAGT TCTTCCTCTG GCTGCGCAAG GAGCACCCTG ATGTGGTGGT GGTGAATTCG
GCGGGCAATG GTGCGTCCTG GTCGGGGACC GATGAATATC GCCTGCCTTC GTCATTCATC
ACCGAACAAT TGCTGGTGGT GGGCGGGCAT CAGCGCAGTG GCAAGGCTAC GGCAGTTGAG
GCCCACGATC ATGTGCGCAA GCGTCACAGT TCCAATATCG ACATGCGCGT GGATGTCAGT
GCTGCTGCCT GCATACGCCC CGTGTCTGCC GAGGCTGCGC ATTGCGGCAC GTCGTACGCA
ACACCCTTGG TGACTGCCAC TGTGGCGACG ATGCTGTCGA TCAACCCGGC ACTTACCCCG
GAACAGGTGC GCATGTTGTT GCGGCGCAGT GCCTTGACCC TGGGCGCCGA ACAGGATTTC
GAAGCGATGG ATGCCGAAGA CCTGACGGCG CCGATCCTGC CCTCAGAGCG TGGTGGCCGC
CTGAACGACC CGGACCTGGG CCGTTCGGCG CGCCTGGACA TGCAGCGTGC GCTGGACCTG
GCCGTGCAGA GCCTGGAACG GGTGCGTTGA
|
|---|
| Protein sequence | MKGVLILLLW LCSLGAQAAA DTLRIKQLQR CGDLFSDSQQ RWCLCAEGLR ANLPTVWLGG
TRLSEADIER QGDRLTLKLA RQAQRSAPLW LADGGRTSNP VWLTRQRSHV IAAGPDEVAK
NMDGLTTYVD LVSLLIEEKY DGLGEARRIA GKYGAQVVGA IPPLNVYQLR LPVEDLVQRD
AMVLRMGSEV SVDAVIVEES APERGEEGNG RGTRAIDQAD EWAANRFMDA LYFYRRRIAA
SGLPVKPVRV GVIEREVDFD APGFSHYRGG CEQGQTCLYA RDGNRPASHG SHVAGILAAQ
GEGFLPGLGK HSPGFEVMVE RNSDAGITAN IAASVNLVED GVRVLNWSWG IHRVGARDVN
GDEVDSLVRS GLAMSGYEEL LEEFFLWLRK EHPDVVVVNS AGNGASWSGT DEYRLPSSFI
TEQLLVVGGH QRSGKATAVE AHDHVRKRHS SNIDMRVDVS AAACIRPVSA EAAHCGTSYA
TPLVTATVAT MLSINPALTP EQVRMLLRRS ALTLGAEQDF EAMDAEDLTA PILPSERGGR
LNDPDLGRSA RLDMQRALDL AVQSLERVR
|
|---|
| |