| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3878 |
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| Symbol | |
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| ID | 1046687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4398916 |
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| End bp | 4399887 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637147287 |
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| Product | phage minor capsid protein C, putative |
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| Protein accession | NP_746008 |
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| Protein GI | 26990583 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0107008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAC ATTTGCGCGC TGCCAGCTTG CTGTTCAACC AGCCGCTACT GACTACACCC
GACATGCTGG ACCTGGCAGT GCGCTGGGCG AACCAGACCA TGAGCCTGAA CATCGTCAAT
CTGAACATGG GCGGCGCTGC AGCCAATCCA TCGATGTTCT ATGACGATGA AGACTACCAG
GCTGAGCAGG ATCGCCGCGA AGAACAGCGC CGCGCCGCCA TCGCCCAGAC GGGTGTGGAG
GTGATCCCCG TCCATGGCGT TCTTGTGAGT CGCGGCAGCC ACTTGAACGC CTGCGAGACC
ATGACCAGCT ATGAAGGGCT GCGAGCAGCC CTGAATAAGG CCATCACTGA CCCCATGGTC
GAACACATTG TGCTCGACAT TGACAGCCCA GGCGGCAGCG CCGTCGGCGC TTTTGAACTG
GCGGCGGACA TTCGGGCCGC GACCAAGATC AAACCAATCA CCGGCCTGGT TAACTTCATG
GCGTACTCAG GGGGTTACCT GATTGCGTCT GCTTGCACTG AAGTCGTGGT TAGCCTGACC
TCCGGTGTAG GGTCCATCGG TGTGGTGGCC AGTCACATGG ATCGCTCGAA GATGATCGAA
GGCATGGGTG TGAAGGTCAC AACGGTCTTT GCCGGCGCAC ACAAAAATGA CCTGAGCCCG
AACGAGCCGA TTACCGAGCA ATCTCTGCAA GTGCTCAACG AAGTCGTGCA AGAAAGCTAT
CAGCTGTTCA CGACCCACGT TGCCGAATAC CGCGGCCGTG ATGTTGCGGA CATCATCGCC
ACCGAGGCTG CCTGTTATCG CGGCTCCTCC GCCATCGCTA TCGGCCTGGC CGACCGCCTG
GAGTCGCCGC AACTTGCGGT GGACAACCTC TCGCGTGCGG TTGCCCTCAG TCGTGCGCAG
CGTCAGGGCC CGCAAACACA GCAGCGCATC AGCGTGCGGG CCTCGGCCTT CGCCATTCAG
TCTCAACTCT GA
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| Protein sequence | MKRHLRAASL LFNQPLLTTP DMLDLAVRWA NQTMSLNIVN LNMGGAAANP SMFYDDEDYQ
AEQDRREEQR RAAIAQTGVE VIPVHGVLVS RGSHLNACET MTSYEGLRAA LNKAITDPMV
EHIVLDIDSP GGSAVGAFEL AADIRAATKI KPITGLVNFM AYSGGYLIAS ACTEVVVSLT
SGVGSIGVVA SHMDRSKMIE GMGVKVTTVF AGAHKNDLSP NEPITEQSLQ VLNEVVQESY
QLFTTHVAEY RGRDVADIIA TEAACYRGSS AIAIGLADRL ESPQLAVDNL SRAVALSRAQ
RQGPQTQQRI SVRASAFAIQ SQL
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