| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3790 |
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| Symbol | dapF |
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| ID | 1046393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4319028 |
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| End bp | 4319834 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637147198 |
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| Product | diaminopimelate epimerase |
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| Protein accession | NP_745920 |
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| Protein GI | 26990495 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0468247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTTT ATAAATACCA TGCGGCTGGA AATGACTACC TTGTATACCG GGACTGCGTA
CCGTTTGATT GCTCCAAACC GATGATTTCA CGTATTTGCG ACCGACACCG CGGGTTGGGC
AGCGACGGCA TACTGGTGCC GGTGATCAAA GAAGGTGAAC GGTTGTCGGT ACGGATCTAC
AACACAGACG GTTCCCAGGC AGAGAAAAGT GGTAATGGCC TGCGTATTCT CTGCCGCTAC
TTGTGGGATC AGAATATCGT GGCCGGTTCA CCCTTTGAAA TATCGACCAA AGGGGGGATC
GTCACCTGCC AGGTACTCGA CAACGGGCAG CGGATTTCGA TCGCCATGGG CCAGGCTGCT
TTTGCCAATA CTGCGGCGTT CACCGTTGAC GTGGACGGCA CACCTTTGCA GTTGCATCCG
GTTTCGATGG GCAACCCCCA TTGCGTGGTG TTCGTGGATC AACCGACTGA AACGCTGGCA
CGACAGTTGG GACCGCTCAT CGAGCGATTG TCGATCTTCC CCGACCGCAC AAATGTTCAG
TTCGTGCGGG TAATCGATCG TCAGACGCTC GAGGTGCAGA TCTGGGAACG GGGGGTCGGC
TACACCCTTT CCTCCGGCAC CAGCAGTTGC GCTGCTGCGG CAGTCTCGCG TCGACTTGGA
CTGGTAGGTC CTCGGGTAGC GGTCAACATG GCCGGCGGCG TCATCATGAT CGAACTGGAC
GACGACTATC ACGTGTTGAT GCAAGGGCCG GTATGCAGGG TCGGCCTCTA CTCGCTGGAC
AGTGAATGCT TGGCTCAGGC GGACTGA
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| Protein sequence | MQFYKYHAAG NDYLVYRDCV PFDCSKPMIS RICDRHRGLG SDGILVPVIK EGERLSVRIY
NTDGSQAEKS GNGLRILCRY LWDQNIVAGS PFEISTKGGI VTCQVLDNGQ RISIAMGQAA
FANTAAFTVD VDGTPLQLHP VSMGNPHCVV FVDQPTETLA RQLGPLIERL SIFPDRTNVQ
FVRVIDRQTL EVQIWERGVG YTLSSGTSSC AAAAVSRRLG LVGPRVAVNM AGGVIMIELD
DDYHVLMQGP VCRVGLYSLD SECLAQAD
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