| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3768 |
|---|
| Symbol | aroE |
|---|
| ID | 1046382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4297230 |
|---|
| End bp | 4298051 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637147176 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | NP_745898 |
|---|
| Protein GI | 161378126 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.101055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00148895 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACAA CTCCCAGCCG GGACACCGTG CTTTGCATCT CTCTGGCCGG TCGCCCCGGC
ACCTTCGGCG TGCGCTTTCA CAACCACCTG TACCAGCAGT TGGGCCTGGA CTTCTACTAC
AAGGCCATGC GCACCGATGA CCTGCCGGCG GCGGTGGCAG GGATCCGCGC CCTGGGTATT
CGCGGCTGCG GGGTGTCGAT GCCGTACAAG GAAGCCTGCA TGGCCTTGGT CGACGAAATC
GATCCCTCGG CGGCGGCCAT CGAGTCGGTC AATACCCTTG TCAATTGCAA TGGCCACCTC
AAGGCGTACA ACACCGATTA CCTGGCCGTG CGCCAATTGC TGGCTCAGCA TCAGGTCGAT
CCGGGCACGG CCTTTGCCCT GCGAGGCAGC GGTGGCATGG CCAAGGCCGT GGCCAGCGCC
TTGCGCGATG CCGGGTTTGC CGAAGGCATC ATCGTTGCAC GCAACGAGCA GGCCGGGCGT
CAGTTGGCGG ATGTCTGTGG TTATCGCTGG GTGCCTGAGC CAGGCGACAT TTGCCCGCCC
ATGCTGGTGA ACGTGACGCC GATCGGTATG GCAGGCGGGC TGGAGGCAGA AGAGCTGGCG
TTTCCCGAGC ACGCCATCGC GGCGGCGGAA CGGGTGTTCG ATGTGGTGGC GATGCCGGCG
CAGACGCCGT TGATTCGCCG GGCTCAGGCG TTGGGCAAGC CGGTGATCAC TGGGCTGGAG
GTCATTGCGC TGCAGGCGCT GGAACAGTTC GTGTTGTACA CCGGGGTAAG GCCGACGCGG
GAGCAGGTGG ATGCGGCGGT GGCATACGCG CGGGCTACCT AG
|
|---|
| Protein sequence | MPTTPSRDTV LCISLAGRPG TFGVRFHNHL YQQLGLDFYY KAMRTDDLPA AVAGIRALGI
RGCGVSMPYK EACMALVDEI DPSAAAIESV NTLVNCNGHL KAYNTDYLAV RQLLAQHQVD
PGTAFALRGS GGMAKAVASA LRDAGFAEGI IVARNEQAGR QLADVCGYRW VPEPGDICPP
MLVNVTPIGM AGGLEAEELA FPEHAIAAAE RVFDVVAMPA QTPLIRRAQA LGKPVITGLE
VIALQALEQF VLYTGVRPTR EQVDAAVAYA RAT
|
|---|
| |