| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3745 |
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| Symbol | glcD |
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| ID | 1046295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4274042 |
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| End bp | 4275541 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637147154 |
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| Product | glycolate oxidase subunit GlcD |
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| Protein accession | NP_745876 |
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| Protein GI | 26990451 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.337857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCC TGTACGACGA ACGCGTCGAT GGCGCGCTGC CCAACGTGGA CCTGGCCGCC
CTGTTGCAGG CGCTGCGCGA TGCCCTGCCG GATCTTGAAA TCCTGCACCG CGATGAAGAC
CTCAAACCGT ACGAATGCGA CGGCCTGTCG GCCTACCGCA CCGTGCCACT GCTGGTGGCG
CTGCCCGAGC GCCTGGAGCA GGTGCAGACG CTGTTGAAGC TTTGCCACCA GCGCGGCGTA
CCGGTGGTTG CGCGTGGCGC CGGTACCGGC CTGTCTGGTG GTGCCCTGCC GCTGGCCAAG
GGCATCCTGC TGGTGATGGC GCGCTTCAAC CGTATCCTCG AGGTCAACCC GCAGGGGCGT
TACGCCCGCG TGCAACCGGG CGTACGCAAC CTGGCCATCT CCCAGGCCGC CGCACCCCAT
GGTATGTACT ACGCACCCGA CCCTTCCTCG CAAATTGCCT GCTCGATCGG TGGCAACGTC
GCCGAAAACG CCGGTGGCGT GCACTGCCTC AAGTACGGCC TGACCGTACA CAATGTGCTC
AAGGTGGACA TCCTTACGGT CGAGGGCGAA CGCCTGAGCC TGGGCAGCGA TGCCCTGGAC
AGCCCCGGCT TCGACCTGCT GGCATTGTTC ATCGGCTCCG AAGGCATGCT CGGTATCGTC
ACCGAAGTCA CCGTCAAGCT GCTGCCCAAG CCCCAGGTGG CGCGGGTGAT ACTGGCCAGT
TTCGACAGCG TCGAGGACGC CGGCCGGGCA GTCGCCGACA TCATCGCTGC CGGCATCATT
CCCGGCGGCC TGGAGATGAT GGACAACCTG GCGATCCGCG CCGCTGAAGA CTTCATCCAT
GCCGGCTACC CGGTGGACGC GGCGGCGATC CTGCTGTGCG AACTGGATGG CGTGGAAGCC
GATGTTTACG ACGACTGCGA GCGCGTCGCC GCCGTGCTGA CGCAAGCCGG GGCCCGCGAG
GTGCACCTGG CCTGCGACGA AGCCGAGCGC GCTCGTTTCT GGGCCGGGCG CAAGAACGCC
TTCCCGGCCG TGGGACGCAT CTCCCCGGAC TACTACTGCA TGGACGGCAC CATCCCGCGC
CGCGAGTTAC CACGGGTGCT CAAGGGCATC AGCGACCTGT CCGCGGAGTA CGGCCTGCGG
GTGGCCAACG TGTTCCATGC CGGCGACGGC AACATGCATC CTTTGATCCT GTTCGATGCC
AACCTGCCCG GCGAGCTGGA GCGTGCCGAA GCGATCGGCG GCAAGATTCT GGAGCTGTGT
GTGAAAGTGG GCGGCAGCAT CACCGGTGAA CACGGCGTGG GGCGCGAGAA GATCAACCAG
ATGTGCGCGC AGTTCAACAG CGACGAAATT ACCCTGTTCC ACGCGGTGAA GGCCGCCTTC
GACCCCCAGG GCCTGCTCAA CCCCGGCAAG AACATTCCCA CCCTGCACCG CTGCGCCGAA
TTCGGCGCCC TGCACGTGCA CCAGGGGCAA CTGCCCTTCC CCGAGCTGGA GCGCTTCTGA
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| Protein sequence | MNILYDERVD GALPNVDLAA LLQALRDALP DLEILHRDED LKPYECDGLS AYRTVPLLVA
LPERLEQVQT LLKLCHQRGV PVVARGAGTG LSGGALPLAK GILLVMARFN RILEVNPQGR
YARVQPGVRN LAISQAAAPH GMYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVHNVL
KVDILTVEGE RLSLGSDALD SPGFDLLALF IGSEGMLGIV TEVTVKLLPK PQVARVILAS
FDSVEDAGRA VADIIAAGII PGGLEMMDNL AIRAAEDFIH AGYPVDAAAI LLCELDGVEA
DVYDDCERVA AVLTQAGARE VHLACDEAER ARFWAGRKNA FPAVGRISPD YYCMDGTIPR
RELPRVLKGI SDLSAEYGLR VANVFHAGDG NMHPLILFDA NLPGELERAE AIGGKILELC
VKVGGSITGE HGVGREKINQ MCAQFNSDEI TLFHAVKAAF DPQGLLNPGK NIPTLHRCAE
FGALHVHQGQ LPFPELERF
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