Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3612 |
Symbol | |
ID | 1041989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4103278 |
End bp | 4105590 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637147026 |
Product | TonB-dependent siderophore receptor |
Protein accession | NP_745748 |
Protein GI | 26990323 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.565753 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAAGGCT CACGCGCTGA CAAGCATAGC CATTACCGGC CGCCTTGCCG GCCCTCTCGG CTGGCGACGC ATTTCGTCGC CGAAATCACT GTTATAGCTA ATACGAATTC TTTACACTTG CTTTACATTT GCAAATCATT ACTATTCGTG ACTCCCGATA ACAACAAAGA GTCGCCTGTA ATGGCAAAAA GGTCTGTTGC CCCAGCATCC ATTTCCATGC TGGGCCTGCT CGTTGTGCCT GCTGTCCACG CTGCCGCCCA AACCGATACG CAAAGTAGCC TCGCCCTGCC CGCCACCGCC GTCACCAGCG TCTATGAGCA GCAAAGCTAC AAGGCCAGTG AAAGCCGCAG CGCCATGAAG ATCGACGCGC CGCTGCGCGA TATCCCGCAA ACCGTCAACG TCGTTCCCGA AAGCGTGATC AAGGACCAAG GCGCACAGTC CATGGAAGAC GTGCTGAAGA ACGTGCCCGG CATCGGCCTG TCCAACGGCG ACGGCCAACG CGATCAGGTG ACCATCCGTG GCTTCAGCGC CATTGGCGAC ATGTACATAG ACGGCGTGCG TGACGACGCC CTGTACTTTC GCGATCTGTC CAACATCGAG CGTGTCGAGG TGATCAAGGG CCCGGCCGCG GTGCTGTATG GCCGTGGCTC CTCGGGCGGG CTGATCAACA GCATCAGCAA AAAACCAAGC TTCACGCCCA AGCGCGAAGT CGGCATGAAC GTCGACAGCG AAGGCAAACG CCGAACCCAG TTCGACACCG GCTGGGCCGA CCCGCAAAGC AACCAGGCCT ACCGCGTGAC CGGTGCCTTC GAAGACAGCG ACACCTTCCG CGATGATGGC TACATCGACC GCAAGGCCAT CGCACCGTCG GCCTACTTCC GTCTCTCGGA CGATCTGGAA CTGAACCTGG GCGCCACCTA CCTGTACGAC AAGCGCCTGA TCGACTTCGG CATCCCGGCC CTGGGCAACC GCCCGGTGGA CGTGGACCGC GACAAGCGCT TTGGCTCTGG CGATGCTGAC CAGGATTACG CCCGCAGCGA GGTGTTCTCG CTTACAGCCA GCCTGGACTA CCGCATCAAC GACAACTTCA CCCTGACCAA CACCAGCCGT TACTACCGCT ACGACTTGGA CCGCAACAAC ACCTTGGCCG ACAGCAGCCC GACGCGCTTC GTCACCGCGC CCGACGGTGA ACTGCTGATC AAGCTCAACC GCGGCAATGT CGCCCGCGAT GAGTACGGTG TGTTCAACCA GACGGAGCTC AAGCAACAAG CGCAACTGGC CGGCATGCAG CACAACCTGT TGTACGGCGT GGAAGCAGGC TTTCAGGACA AGTACCAGCG CGTGCTGAGC CAGACCAACG TGGCCCAGGT ACCGGTGTAC CGTGACGCCT TGGTGCCGGT ACCGGAACAT GCCGCCAACC TGTCGTCCAA GGGCACCAAC TTCCAGCAGA CCACCGGTCT GTACGTGCAG GACATGATCG AGCTGAACGC GCACTGGAAG GCACTGGTCG GTGTGCGTTA TGACATCTTT GGCCAGGAGT ACGACGACGA CCGCGTGCAA AACATCGACC TGGATCGTAC CGACAAGACC TGGAGCCCGC GTGCGGGTCT GGTCTACCAG CCAGACGCCA TCCAGTCCTA CTACGTGTCG GTCAGCCGCA GCTATCAGCC TTCGGGCGAA GTGTTCGCGG TGAGCCCGAG CAACCAGCAC CTGGAGCCGG AAGAAACCAC CAACTATGAA ATCGGCGCCA AATGGGACCT GCTCGACAGC CGCCTGTCAC TGACCGCCGC AGTGTTCCGC CTTGAGCGCA CCAACATGAA GACTGCCGAC CCGGCCAACC CCAACCTGAC CGTATTGGCT GGCGAACAGC GTACCGATGG CTTTGAAGCC ACCGTCAGCG GGCATCTCAC CGACAAGTGG CAGATCTATG CCGGTTACGC TTACCTGGAC GCCGAAATCA CCAAGTCCAA CAGCAAGACC AATGGCGTGG CGAACGAAGG CCAGACCCCT ACCCTGACGC CGCGCAACAG CGCCAATGTC TGGTTGGTAC GTACCCTGAC ACCAGAGTGG CGTGTGGCCG CCGGAGCCAA CTACGTCGAC GAACGCTACA CAGCGCTCGA CAATGTGGTG GTGATGCCAG GCTATACCAC CTTCGACGCC GCGCTGCTGT ACAGCGTGCC GCAGTGGGAT GCCGCGCTGC GCCTGAAGAA CGTGTTCGAC CGTGACTACT ATGCCTCGGC ACATGGCTCG GTCGACCTGA TCACCCCAGG GGCACCGCGC ACGCTGGAAG CCAGCTTCAA CTACCGCTTC TGA
|
Protein sequence | MKGSRADKHS HYRPPCRPSR LATHFVAEIT VIANTNSLHL LYICKSLLFV TPDNNKESPV MAKRSVAPAS ISMLGLLVVP AVHAAAQTDT QSSLALPATA VTSVYEQQSY KASESRSAMK IDAPLRDIPQ TVNVVPESVI KDQGAQSMED VLKNVPGIGL SNGDGQRDQV TIRGFSAIGD MYIDGVRDDA LYFRDLSNIE RVEVIKGPAA VLYGRGSSGG LINSISKKPS FTPKREVGMN VDSEGKRRTQ FDTGWADPQS NQAYRVTGAF EDSDTFRDDG YIDRKAIAPS AYFRLSDDLE LNLGATYLYD KRLIDFGIPA LGNRPVDVDR DKRFGSGDAD QDYARSEVFS LTASLDYRIN DNFTLTNTSR YYRYDLDRNN TLADSSPTRF VTAPDGELLI KLNRGNVARD EYGVFNQTEL KQQAQLAGMQ HNLLYGVEAG FQDKYQRVLS QTNVAQVPVY RDALVPVPEH AANLSSKGTN FQQTTGLYVQ DMIELNAHWK ALVGVRYDIF GQEYDDDRVQ NIDLDRTDKT WSPRAGLVYQ PDAIQSYYVS VSRSYQPSGE VFAVSPSNQH LEPEETTNYE IGAKWDLLDS RLSLTAAVFR LERTNMKTAD PANPNLTVLA GEQRTDGFEA TVSGHLTDKW QIYAGYAYLD AEITKSNSKT NGVANEGQTP TLTPRNSANV WLVRTLTPEW RVAAGANYVD ERYTALDNVV VMPGYTTFDA ALLYSVPQWD AALRLKNVFD RDYYASAHGS VDLITPGAPR TLEASFNYRF
|
| |