| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3581 |
|---|
| Symbol | |
|---|
| ID | 1046230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4062248 |
|---|
| End bp | 4064335 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637146996 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | NP_745718 |
|---|
| Protein GI | 26990293 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACCG GTAGCTACTC CTCTTCGCTG GTGTTGATTT CGCTGTGCGT GGCGATCCTG
GCATCCTATA CCGCCCTTGA CCTGACCGGC CGCATCGCCA CGGCCAAGGG CCGCGCTGCC
TGCCTGTGGA TGGGCGGCGG TGCGTTGGCC ATGGGCATCG GCGTGTGGTC GATGCACTTC
ATTGGCATGC TTGCCTTCAG CTTGCCCATC GACTTGGGGT ACGACCTGGC CCTGACCGCG
TTCTCGCTGC TGATCGCTGT GCTGTCCTCG GGCTTTGCCT TGTGGCTGGT CAGCCAGCCG
AGCCTGCCAG CGCTGCAGTT GGGGTTTGGC GCGCTGATCA TGGGCGCCGG TATCGCTTGC
ATGCACTACA CCGGCATGGC TGCCCTGCGC ATGCTGCCGG GCATCGATTA CGACCCGACG
TTGTTCGGTG CTTCGCTGCT GATTGCCGTA GGCGCCTCGG CGGCGGCATT GTGGATCGCG
TTCCGCCTGC GCAGACACAC CCCCTATGTA CGGCAGATCC GCGGCCTGGC GGCGGTGGTC
ATGGGCGTTG CCATCGTGGG CATGCATTAC ACCGGCATGG CAGCGGCGAA TTTCCCCGAG
GGCAGCTTTT GCGGCGCGCT GGGCGGCGGG TTGCAGGGGG ACAGCCTGGT TTACCTAGTG
CTGATCACCA CGCTGGCAGT ACTGGCAGTG GCTTTGCTGA CTTCGGTGCT GGACGCGCGT
CTCGAGGCAC GTACAGCCGA GTTGGCCCGT TCGCTGACCT TGGCCAACCA GGAACTGACC
CAACTGGCCT TGCACGACAC CCTCACCGAT CTGCCCAACC GTACCCTGCT GGCCGATCGC
ATCGAACAGG CCATCGCCAA AGTGGCGGAG CAGGGCGGCT GTTTTGCCCT GATGTTCATT
GATCTGGACG GTTTCAAACC CGTCAACGAT GCCTTTGGCC ATCATATTGG AGACCTTCTG
CTCAAGGCAG TGGCGGCCCG CCTGCGCGGC CACCTGCACA GCCAGGACAC GCTGGCTCGG
ATTGGCGGCG ACGAATTCGT GCTGCTGGTG GAGCTGCAGG AGCCGAACGA TGCCATGGAC
GTGGCGGTCA AGCAGGTCAA CCTGGTGTCC CGGCCTTTCC GCGTGGCCGA GCACGACCTG
CAACTGTCGG CGAGCCTGGG CATCGTCCTG TATCCGGGCA ACGGCCAGGA CCAGCACGAG
CTGCTGCGTA ACGCCGACGC TGCCATGTAC CATGCCAAAA GCGCCGGCAA GAACGGTTAC
AGCTTCTTCG ATGTGTCGAT GAACAGCAAT GCGCGCCAGC AGTTGCAGCT GCTGCAGGAC
TTGCGCCTGG CGCTGGAGCA GCGCCAGTTC CGCTTGCATT ACCAGCCCAA GTTCGACGCC
CAGGCCTGCC AACCGATCGG TGCCGAAGCG TTGCTGCGCT GGGAGCACCC GCAGCAGGGC
CTGCTGCTGC CTGACCGCTT CATCGGCCTG GCGGAAAAGA CCGGGCTGAT CATCCCCATT
GGTGAGTGGG TACTCACTGA GGCCTGCCGT CAGATGCGTC AGTGGCTGGA CCAGGGGCAC
CATGGCTGGC GCATGGCGGT GAACCTGTCG GCCATCCAGT TCTGCCATGC CGGTCTGGTC
GACAGCGTGG CCCGCGCCCT GCAGCAGAAC GGCTTGCCAG CCAACTGCCT GACACTGGAA
ATTACCGAAA CCACCGCCAT GCACGATGCC GATGCCAGCC TGACCGTGCT GCAGCGCCTG
TCCGACATGG GCGTGGACTT GTCCATTGAT GACTTTGGTA CGGGCTATTC CAGCCTGATG
TACCTCAAAC GCCTGCCAGC CAACGAGCTG AAAATCGACC GCGGCTTCGT ACGTGATCTG
GAGCAGGACA GTGACGATGC AGCGATTGTT TCGGCAATCG TCGCACTGGG CCAGGCGTTG
GGCCTGCGTA TCGTTGCCGA GGGGGTTGAA ACCGACAAGC AGCAGGACTT CCTGACCCGT
CTGGGATGTG ACTCGTTGCA GGGCTACCTG CTGGGCCAGC CCGTGCCGGC CGAGCAGTTC
ATGAGCAAGT TGCAGGCCAT GGGCCCGGAA CTCACTGCTG CGGGCTAG
|
|---|
| Protein sequence | MLTGSYSSSL VLISLCVAIL ASYTALDLTG RIATAKGRAA CLWMGGGALA MGIGVWSMHF
IGMLAFSLPI DLGYDLALTA FSLLIAVLSS GFALWLVSQP SLPALQLGFG ALIMGAGIAC
MHYTGMAALR MLPGIDYDPT LFGASLLIAV GASAAALWIA FRLRRHTPYV RQIRGLAAVV
MGVAIVGMHY TGMAAANFPE GSFCGALGGG LQGDSLVYLV LITTLAVLAV ALLTSVLDAR
LEARTAELAR SLTLANQELT QLALHDTLTD LPNRTLLADR IEQAIAKVAE QGGCFALMFI
DLDGFKPVND AFGHHIGDLL LKAVAARLRG HLHSQDTLAR IGGDEFVLLV ELQEPNDAMD
VAVKQVNLVS RPFRVAEHDL QLSASLGIVL YPGNGQDQHE LLRNADAAMY HAKSAGKNGY
SFFDVSMNSN ARQQLQLLQD LRLALEQRQF RLHYQPKFDA QACQPIGAEA LLRWEHPQQG
LLLPDRFIGL AEKTGLIIPI GEWVLTEACR QMRQWLDQGH HGWRMAVNLS AIQFCHAGLV
DSVARALQQN GLPANCLTLE ITETTAMHDA DASLTVLQRL SDMGVDLSID DFGTGYSSLM
YLKRLPANEL KIDRGFVRDL EQDSDDAAIV SAIVALGQAL GLRIVAEGVE TDKQQDFLTR
LGCDSLQGYL LGQPVPAEQF MSKLQAMGPE LTAAG
|
|---|
| |