Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3549 |
Symbol | emrA |
ID | 1046243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4024502 |
End bp | 4025695 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146964 |
Product | secretion protein HlyD family protein |
Protein accession | NP_745686 |
Protein GI | 26990261 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACTC CCACAGACAC CCCGACTCCC TCCGTCGCGC CTGAGCCGTC GCGCAAGCGC AAGGCTTGGC TGCTTGGCCT GCTGTTGCTG CTGATCCTTG CCGGGGTCGG CACCTGGGCC TGGTACAGCA TTGTCGGGCG TTGGCACGAA AGCACCGACG ATGCCTACGT CAACGGCAAC GTGGTGGAAA TCACCCCGCT GGTCGCTGGC ACCGTTACCA GCATCGGGGC CGATGACGGC GACCTGGTCC ATGCCGGCCA GGTATTGCTG CAATTCGACC CGGCCGACAG CGAAGTGGCC TTGCAGTCCG CCGAAGCCAA GCTGGCACGC AGCGTGCGGC AGGTGCGCGG GCTTTACAGC AACGTCGACT CGCTGAAGGC TCAACTGGAA ACGCGCCAAG CCGAACTGCG CAAGGCGCAA CAGGACTTCA ACCGGCGCAA GGTGCTGGCT GACAGCGGTG CGATTGCCGC AGAAGAACTG TCCCACGCCC GTGACGACCT GAGCGTTGCC CAGGCTGCCG TCAACAGCGC GCGGCAACAG CTCAGCACCA GCAGCGCGCT GGTCGACGAC ACCGTGGTGT CCTCGCACCC CGATGTCATG GCTGCAGCTG CCGACCTGCG CCAGGCCTAC CTCGACCACG CCCGCACCAC GTTGGTCGCG CCGGTCACCG GCTACGTCGC CAAGCGTACC GTCCAGTTGG GCCAGCGCCT GCAGCCGGGC ACCGCGACCA TGGCGGTCAT CCCGCTGGAT CAGGTGTGGA TCGATGCCAA CTTCAAGGAA ACCCAGCTGC GAGAGATGCG CATCGGCCAG CCGGTGGAAA TCACCGCTGA TGTGTACGGC AGTGAGGTCA AGTACAGCGG CACGGTCGAC AGCCTTGGTG CGGGCACCGG CAGCGCCTTT GCCTTGCTGC CGGCGCAGAA CGCCACCGGC AACTGGATCA AGATTGTCCA GCGAGTACCC GTGCGCATCC ACCTCAGCCC CGACCAGCTC AAGGACCACC CGCTACGTAT CGGCCTGTCC ACCGTGGTTG AAGTCGACCT GCATGACCAG AGCGGCCCGA CCCTGGCCCA GCAGCCACCG CAGAAGGCCA GCTACACCAC CCAGGTGTAT GACCACCAGC TGATGGAAGC CGACAACCTG ATCGCCCGGC TGATTCACGA GAACAGCGCA ACCGGCAAGA CGGCGCAACG ATGA
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Protein sequence | MATPTDTPTP SVAPEPSRKR KAWLLGLLLL LILAGVGTWA WYSIVGRWHE STDDAYVNGN VVEITPLVAG TVTSIGADDG DLVHAGQVLL QFDPADSEVA LQSAEAKLAR SVRQVRGLYS NVDSLKAQLE TRQAELRKAQ QDFNRRKVLA DSGAIAAEEL SHARDDLSVA QAAVNSARQQ LSTSSALVDD TVVSSHPDVM AAAADLRQAY LDHARTTLVA PVTGYVAKRT VQLGQRLQPG TATMAVIPLD QVWIDANFKE TQLREMRIGQ PVEITADVYG SEVKYSGTVD SLGAGTGSAF ALLPAQNATG NWIKIVQRVP VRIHLSPDQL KDHPLRIGLS TVVEVDLHDQ SGPTLAQQPP QKASYTTQVY DHQLMEADNL IARLIHENSA TGKTAQR
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