Gene PP_3428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3428 
Symbol 
ID1046469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp3882835 
End bp3884034 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content66% 
IMG OID637146844 
ProductTPR domain-containing protein 
Protein accessionNP_745566 
Protein GI26990141 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.122721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGCCA TCGTATTCAC CCCAATACGC AGTGCATGGA ATGCCACCGC AGGCCTGGCG 
CCTGGCCAAC GGCGTGCCCG GTTCGGTTGC ATTTACCCCC CGGCTGGCCC AAGCTCTGCC
CTTCCCGCCG CCACGGATCG TCCGATGCCC AGACGCAACC GCTACCTGAT CGCCCTGCTG
TTGTCGATTC TGGTATCGGC CCTGTTCGGC TACCTGTGGC GCGACGCCCC GCCAACCCCG
CCGACCTTGC CAGCACACAG CTACGCCAAG GCGCTGCGCC AGGCTCACGA CGGCCAGCCC
GGTGCCGCAC GGGTGTTGTA CCAGCAATTG CAACGTAACG ACCTGCCTGC GATCCGCCGT
GCGGCGCTGT ACGCCGAGTT GCCCAACTAC CCCTCGCCGC AGGCATTGAA ACTGGCCCGC
CAGGACCTGG AACATGCCGA GCCGCTGGTG CGTCGAGCGG CCATTGCCAG TATCCGCCGC
CTGTTACCGC CAGCACAGCG CAGCCTGGTA CTCGGCCCGC TGCTGGACGA CAGTGAGCAA
AGCGTGCGTT TTGCCGCCGT GGATGCCCTG CTGGGCCTCG ATCCCGACGC CATCGGCCTC
TATTTCGGCC CCCTGCAGTC AGCCCTGGAG CAATACCAGC AAGCCCTGGA GCAACAGCCT
GAAGATGCCG ACGCCCAAGT GCACCTGGCG CGCCTGTACC TGCACGAAAA CGACTACACG
CACGCCGCTG CAGCCCTGCA GCGAGCGCTC GCGGTTGCCC CCGGCAACCT CGATGCCCTG
GCGACTCAGG TACGCCTGCT CGAGCGCCAG GGCCACCACG ACGCCTCCCG CCAGGTGCTG
GGCAAAGCCC TGGCGCTGAG CCCCGACTCG GCCTTTCTGC AGTATGAGCT AGGGCTTTGG
CTGAAGCGCC ACGAACAGCG CGAGTATGCC TTGCTGGCCC TGTCCCGCGC CGTCGAACTG
GACCCGGACA ACGCCGATTA CCGCTATACC CTGGCGGTCA CCCTGCATGA GCTGGACCAG
CTCGACGCCG CCCAGAAGCA ACTGGAAACC GTGCTCAATC GGCAGCCAGC CAATCGCCGG
GCACGGGTGC TGCTGATTCA GTACTGGAAA GAGTCCGGCC AGTTGCAGAA CGTGCAAGTA
TCGCTCGCCG AGCTGGAGCG CCAGAACCCG GACGACCCTG CGCTGCAACA GGGCCTGTAG
 
Protein sequence
MFAIVFTPIR SAWNATAGLA PGQRRARFGC IYPPAGPSSA LPAATDRPMP RRNRYLIALL 
LSILVSALFG YLWRDAPPTP PTLPAHSYAK ALRQAHDGQP GAARVLYQQL QRNDLPAIRR
AALYAELPNY PSPQALKLAR QDLEHAEPLV RRAAIASIRR LLPPAQRSLV LGPLLDDSEQ
SVRFAAVDAL LGLDPDAIGL YFGPLQSALE QYQQALEQQP EDADAQVHLA RLYLHENDYT
HAAAALQRAL AVAPGNLDAL ATQVRLLERQ GHHDASRQVL GKALALSPDS AFLQYELGLW
LKRHEQREYA LLALSRAVEL DPDNADYRYT LAVTLHELDQ LDAAQKQLET VLNRQPANRR
ARVLLIQYWK ESGQLQNVQV SLAELERQNP DDPALQQGL