Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3428 |
Symbol | |
ID | 1046469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3882835 |
End bp | 3884034 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637146844 |
Product | TPR domain-containing protein |
Protein accession | NP_745566 |
Protein GI | 26990141 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.122721 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGCCA TCGTATTCAC CCCAATACGC AGTGCATGGA ATGCCACCGC AGGCCTGGCG CCTGGCCAAC GGCGTGCCCG GTTCGGTTGC ATTTACCCCC CGGCTGGCCC AAGCTCTGCC CTTCCCGCCG CCACGGATCG TCCGATGCCC AGACGCAACC GCTACCTGAT CGCCCTGCTG TTGTCGATTC TGGTATCGGC CCTGTTCGGC TACCTGTGGC GCGACGCCCC GCCAACCCCG CCGACCTTGC CAGCACACAG CTACGCCAAG GCGCTGCGCC AGGCTCACGA CGGCCAGCCC GGTGCCGCAC GGGTGTTGTA CCAGCAATTG CAACGTAACG ACCTGCCTGC GATCCGCCGT GCGGCGCTGT ACGCCGAGTT GCCCAACTAC CCCTCGCCGC AGGCATTGAA ACTGGCCCGC CAGGACCTGG AACATGCCGA GCCGCTGGTG CGTCGAGCGG CCATTGCCAG TATCCGCCGC CTGTTACCGC CAGCACAGCG CAGCCTGGTA CTCGGCCCGC TGCTGGACGA CAGTGAGCAA AGCGTGCGTT TTGCCGCCGT GGATGCCCTG CTGGGCCTCG ATCCCGACGC CATCGGCCTC TATTTCGGCC CCCTGCAGTC AGCCCTGGAG CAATACCAGC AAGCCCTGGA GCAACAGCCT GAAGATGCCG ACGCCCAAGT GCACCTGGCG CGCCTGTACC TGCACGAAAA CGACTACACG CACGCCGCTG CAGCCCTGCA GCGAGCGCTC GCGGTTGCCC CCGGCAACCT CGATGCCCTG GCGACTCAGG TACGCCTGCT CGAGCGCCAG GGCCACCACG ACGCCTCCCG CCAGGTGCTG GGCAAAGCCC TGGCGCTGAG CCCCGACTCG GCCTTTCTGC AGTATGAGCT AGGGCTTTGG CTGAAGCGCC ACGAACAGCG CGAGTATGCC TTGCTGGCCC TGTCCCGCGC CGTCGAACTG GACCCGGACA ACGCCGATTA CCGCTATACC CTGGCGGTCA CCCTGCATGA GCTGGACCAG CTCGACGCCG CCCAGAAGCA ACTGGAAACC GTGCTCAATC GGCAGCCAGC CAATCGCCGG GCACGGGTGC TGCTGATTCA GTACTGGAAA GAGTCCGGCC AGTTGCAGAA CGTGCAAGTA TCGCTCGCCG AGCTGGAGCG CCAGAACCCG GACGACCCTG CGCTGCAACA GGGCCTGTAG
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Protein sequence | MFAIVFTPIR SAWNATAGLA PGQRRARFGC IYPPAGPSSA LPAATDRPMP RRNRYLIALL LSILVSALFG YLWRDAPPTP PTLPAHSYAK ALRQAHDGQP GAARVLYQQL QRNDLPAIRR AALYAELPNY PSPQALKLAR QDLEHAEPLV RRAAIASIRR LLPPAQRSLV LGPLLDDSEQ SVRFAAVDAL LGLDPDAIGL YFGPLQSALE QYQQALEQQP EDADAQVHLA RLYLHENDYT HAAAALQRAL AVAPGNLDAL ATQVRLLERQ GHHDASRQVL GKALALSPDS AFLQYELGLW LKRHEQREYA LLALSRAVEL DPDNADYRYT LAVTLHELDQ LDAAQKQLET VLNRQPANRR ARVLLIQYWK ESGQLQNVQV SLAELERQNP DDPALQQGL
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