| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3395 |
|---|
| Symbol | |
|---|
| ID | 1046462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3845728 |
|---|
| End bp | 3846693 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637146813 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_745535 |
|---|
| Protein GI | 26990110 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0602491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.492377 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTTT TGCTACAGTG CTACGGCGGT CCCTTCCCCA AGCCGAGCCA AGCGATGCAA
CCCCTCGACC ACCTTTCCCT GAACCTGTTC ATCGTCGTCT GCGAAGAAGG CACCATCGCC
CGCGCAGGCG AGCGCGCGTT CATGGCGCCG TCCGCCGTCA GTAAACGTAT TTCAGACATT
GAGGCGCGCT TTGGCACCGC CTTGCTCAAA CGTAGCAAGC GCGGCGTGGA GCCCACCCCG
GCGGGGCTTG CACTGCTGCG CCATGCCAGG GAAATGACCC GCGCCATGGA ACGCCTGGAC
AGCGAGCTGA GCGAATACGC CCACGGCGCG CGTGGTCATG TGCGGGTGCT GGCCAATGTA
TCGTCGATCA TGGAGTTTCT GCCCGAAGAA CTGTCAGCGT TCATGCTGGA ATACCCACTC
ATCCAGGCCG ATATCGAAGA GCGCTTCAGC GCCGATGTCG TTCGTGGTGT GGCCGAGGGC
ACTGCAGACC TTGGTATCTG CCGCAAATCC ATGGCGGTGG GTGACCTGGA TTTCGTACCG
TATCGGCAGG ATCACCTGGC CGTGGTCGTT GCTGCTGACC ACCCGTTGGC CGGCCGCAGC
CAGATTGCCT TCGAGGAAAC CCTGGGTTAC GACCACCTGG GGCTATCGGC CTTTGCCACA
TTGAACGCTT TCATGCGTAA AAGCGCCGAA CAGTCAGGCA AGGCGCTGCG TTTTCGTTCG
TACGTGTCGT CGTTCGACGC GGCATACCGT CTGGTGCAGT TTGGCCTTGG CCTGGCGGTG
TTCCCGCAAG AGGCCGTGTC CCGCTATGCG GCGTTGTTCG ACCTGCGGGT CATTGCGCTG
ACTGACGACT GGGCGCTTGG TGAATTCGTC ATCTGCATGC GCGACCGGCA CACGCTCTCG
CTGTCGGCTC GGCGCCTGCT TGACCACCTG TTGCTGCGTG CACCGGCCTG GCAGGGCGCG
GGCTGA
|
|---|
| Protein sequence | MRFLLQCYGG PFPKPSQAMQ PLDHLSLNLF IVVCEEGTIA RAGERAFMAP SAVSKRISDI
EARFGTALLK RSKRGVEPTP AGLALLRHAR EMTRAMERLD SELSEYAHGA RGHVRVLANV
SSIMEFLPEE LSAFMLEYPL IQADIEERFS ADVVRGVAEG TADLGICRKS MAVGDLDFVP
YRQDHLAVVV AADHPLAGRS QIAFEETLGY DHLGLSAFAT LNAFMRKSAE QSGKALRFRS
YVSSFDAAYR LVQFGLGLAV FPQEAVSRYA ALFDLRVIAL TDDWALGEFV ICMRDRHTLS
LSARRLLDHL LLRAPAWQGA G
|
|---|
| |