| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3260 |
|---|
| Symbol | ligD |
|---|
| ID | 1046910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3693663 |
|---|
| End bp | 3696164 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637146681 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | NP_745403 |
|---|
| Protein GI | 26989978 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CCCTGCAGGA ATACGCGCGC AAGCGCGACT TCAACGCCAC ACCCGAGCCC
AGCGGCAAAC GCAAACGTGG CAAACGGGCC CATGCGCTGC AGTTCTGCAT CCAGAAACAC
GACGCCAGTC ATTTGCACTA CGACTTCCGC CTGGAGCTCG ATGGCACCCT GAAAAGCTGG
GCGATCCCCA AAGGCCCGTC GTTGGACCCC AAGGTGCGCC GCCTGGCGGT GCATGTGGAG
GATCACCCGC TGGACTACGC CGATTTCGAG GGCCATATCC CGGAAGGCCA CTATGGTGCA
GGGGACGTGA TCGTCTGGGA CCGCGGTATC TGGGAGCCTG AAGGCGACGC GCATGAAGCC
TACGCCAAAG GCAAGCTGCG ATTCCGCCTG CTGGGTGAGA AGCTAGGCGG CGTGTGGAAC
CTGTTTCGCA CCCACCTGGC CGGCAAGAAA GAACAATGGA TGCTGGTCAA GTCGCACGAC
GCCCAGGCGT GCAGCGAAAC CGAGTACAGC ATTGTCGAGG CCCTGCCCGA CAGCGTGCTC
AGCGAGCGCA CGCTGGTGCC ATGCAAATCC GCTGCAAAAA AAGCCACTGC CCCGCGCAGC
AGCCGTAAAC GCGCCGACAA AGTTCAGGCT GCACCCTTGC CAGCACAGTT ACAGCCACAG
CTGGCAACGT TGGTGGACTC TCCCCCCAGC GGCGACTGGC GCTACGAAGT CAAGTTCGAT
GGCTACCGTA TTCTGGCCCG CATCGAGGGC CAGGACATCC GCCTGTTCAC CCGCAACGGC
CATGACTGGA GCAGCAAGAT GCCCCGGCAG GTTGCCGCCC TGCGCGCGCT GGGCATCGAC
TCGGCCTGGC TCGATGGCGA AATGGTGGTG GCTGATGAGA ATGGCATGGC TGACTTCCAG
GCGTTGCAGA ACGCCTTCGA TACCGAGCAC GACGAACGCA TCACCTATTA CCTGTTCGAC
CTGCCATTTC TGGGCGGCCA GGACCTGCGA CAGCTACCGC TGCAGAACCG CCGCAATACA
TTGCGCCAAC TGCTTGAGCA CAACCATTGC GACGTCATCA AGTATTCCGC CGACTTCGAC
GAACCTGTCC AGTCACTGCT CGACAGTGCC TGCCGGCTGA AGCTGGAAGG CCTGATCGGC
AAGCGAGTTG ACAGTGTCTA CAGCGGCCGC CGTAGCCCGG ACTGGATCAA GCTCAAGTGC
AAGCAACGCC AGGAGTTCGT GATCGTCGGC TACACCGACC CCAAAGGCAG CCGCAGCGGC
TTCGGTGCCC TGCTGCTGGC CCTGCACGAC AACGACAGTG GCCAGCTGCG CTATGCCGGT
AAGGTCGGTA CCGGCTTCAA TGCCACGACA CTGGCCAGCA TCCACGCGCG GCTCAAGCCC
CTGGAAATCG CCAGGCCAGC CCTGCCCTCG CCGCCTGCCG GAGCCGAAGC GCGTGGTGTG
CACTGGCTGC GACCGCAGTT GTTGGCGGAA GTCGCCTTTG CCCAGATGAC CCGTGACGGC
ATCGTGCGCC ATTCGGTGTT CCACGGCCTG CGCGATGACA AGGCGGCAAC CGCCATTGAC
CTGGAGCGCG CCATGCCCGC AAAAACTGTA TCCAACCGCA ACAAGCAGGC CAAGGCGTCT
GAGAACCTGG GTGAACTGCG GCTGACCCAC CCCGACCGGG TCATCGACCC CACCACGGGT
GTGACCAAGC GCGAAGTCGC CGAGTATTAC GCTGGCATCA GCCAGTGGAT CCTGCCACAG
CTCAAGCACC GCCCGGTGGC ATTGGTGCGC GCCCCGGACG GCCTGGGCGG CGAGCTGTTC
TTCCAGAAAA ACGCGGGCCA ACTGTACATA CCCAACGTAC TCAGCTACGA AAAGGCCGAG
GCCGGCCAGG CAGCGATGGT CATCAATCGC GCCGATACGC TGCTGGGTGC GGTGCAGATG
AACATGCTGG AGCTGCACAC CTGGAACGCC ACAGACAAGG ATTTCGATAA ACCGGACCGT
TTTGTCCTCG ACCTGGACCC TGACCCTGCG CTGCCCTGGA AGGCCATGGT GGAGGCGACC
CAACTGACCC TCACCCTGCT GGACGAACTG GGCCTGAAGG TGTTCCTGAA AACCAGTGGT
GGCAAGGGTA TTCACGTGGT TGTGCCCTTG ACCCGGCGAG CCGGGTGGGA CGAGGTCAAG
GACTTCAGCC ACGCCATCGT CAATTACCTG GCCAAGCTGT TTCCGGAGCG CCTGAGCGCG
GTGTCGGGGC CGAAAAATCG CGTGGGACGC ATTTTCATCG ACTACCTGCG CAACGGCAAG
GGCGCTACCA CGGCGTGCGC CTATTCACTG CGAGCCCGTG ACGGGCTGCC AGTATCGGTA
CCTATCTGGC GTGAGGAACT GGCGCAAATC AAGGCCGCCA ACCAATGGAA CATCACCAAC
CTGCACGAGC ATCTGGCGGA GGTCGACGAC CCTTGGGCCG ACATGGGCAA GGTACGCCAG
TCGATCACCG CGCGCATGCG CAAGCAGCTA GGGCTCGAAT GA
|
|---|
| Protein sequence | MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA
YAKGKLRFRL LGEKLGGVWN LFRTHLAGKK EQWMLVKSHD AQACSETEYS IVEALPDSVL
SERTLVPCKS AAKKATAPRS SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD
GYRILARIEG QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQNRRNT LRQLLEHNHC DVIKYSADFD
EPVQSLLDSA CRLKLEGLIG KRVDSVYSGR RSPDWIKLKC KQRQEFVIVG YTDPKGSRSG
FGALLLALHD NDSGQLRYAG KVGTGFNATT LASIHARLKP LEIARPALPS PPAGAEARGV
HWLRPQLLAE VAFAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS
ENLGELRLTH PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF
FQKNAGQLYI PNVLSYEKAE AGQAAMVINR ADTLLGAVQM NMLELHTWNA TDKDFDKPDR
FVLDLDPDPA LPWKAMVEAT QLTLTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK
DFSHAIVNYL AKLFPERLSA VSGPKNRVGR IFIDYLRNGK GATTACAYSL RARDGLPVSV
PIWREELAQI KAANQWNITN LHEHLAEVDD PWADMGKVRQ SITARMRKQL GLE
|
|---|
| |