| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3247 |
|---|
| Symbol | |
|---|
| ID | 1046894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3680755 |
|---|
| End bp | 3681648 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637146668 |
|---|
| Product | bile acid/Na+ symporter family protein |
|---|
| Protein accession | NP_745390 |
|---|
| Protein GI | 26989965 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0385] Predicted Na+-dependent transporter |
|---|
| TIGRFAM ID | [TIGR00841] bile acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCT CGCCCCTGCT CACTGCGTTT CTGCCGCTTG CCCTGGGCAT CATCATGCTT
GGCCTTGGGT TGTCGTTGAC CCTGGCTGAC TTCGCGCGCG TGGTGAAGTA TCCAAAGCCC
GTGGTGGTGG GCCTGGTGTG CCAGATCCTG CTGTTGCCGC TGGTGTGCTT CCTGATCGCC
AACGGCTTTG GCCTGGAATC TGCCCTGGCA GTGGGGTTGA TGCTGCTGGC TGCTTCGCCG
GGCGGTACCA CGGCCAACCT GTTCAGCCAT CTGGCCCACG GTGACGTGGC GTTGAACATC
ACCCTGACGG CGGTCAACTC ACTGATCGCG ATCCTGACCA TGCCGTTGCT GGTGAACCTG
TCGCTGAGCT GGTTCATGGC CTCGGACCAG GCTATTCCAC TGCAGTTCGC CAAGGTCATG
CAGGTGTTCG CCATCGTCTT GCTGCCGGTG GCGCTGGGCA TGCTGATTCG CCATTTCGCC
CCGGCGTTCG CTGCGCGCAT GGAAAAACCG ATGAAGCTGG TGGCTGCGCT GTTCCTGGCC
TTCACCATCG TCCTGGCATT GGCCAAGGAC TGGCAGACAG TGGTCGAGTA CGCACCGGTG
GTGGGCCTGG CGGCGCTGCT GTTCAACCTG CTGAGCCTGA CGGTGGGCTA TTGGGTGCCG
CGGCTGTTGA ACATTTCCAA GCGCCAGGCG ATTGCCATTG GTATGGAAAT TGGCATCCAT
AACGGGACCT TGGCGATTGC CCTGGCGTTG AGCCCTTCGC TGCTGAACAA CGCGACCATG
GCGGTGCCGG CTGCGTTGTA CAGCTTGATC ATGTTCTTTA CCGCGGCCGG GTTTGGCTGG
TGGGTGAGCC GCGGGCATGT GGCGGCTGAG CCCAAGGGTG AAACCGTGAA CTGA
|
|---|
| Protein sequence | MTASPLLTAF LPLALGIIML GLGLSLTLAD FARVVKYPKP VVVGLVCQIL LLPLVCFLIA
NGFGLESALA VGLMLLAASP GGTTANLFSH LAHGDVALNI TLTAVNSLIA ILTMPLLVNL
SLSWFMASDQ AIPLQFAKVM QVFAIVLLPV ALGMLIRHFA PAFAARMEKP MKLVAALFLA
FTIVLALAKD WQTVVEYAPV VGLAALLFNL LSLTVGYWVP RLLNISKRQA IAIGMEIGIH
NGTLAIALAL SPSLLNNATM AVPAALYSLI MFFTAAGFGW WVSRGHVAAE PKGETVN
|
|---|
| |