| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3078 |
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| Symbol | |
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| ID | 1043637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 3462426 |
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| End bp | 3464354 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637146500 |
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| Product | ABC transporter, periplasmic binding protein, putative |
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| Protein accession | NP_745222 |
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| Protein GI | 26989797 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.926861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCAGCC CCCCTGTGGG AGCGGGTTTA CCCGCGAAGA GGCCAGACCA GACAACCTCG
TTGCCTGCTC CGACGCATTC GCGGGTAAAC CCGCTCCCAC AAGTATTGTG GGGGCTTGTA
TTTTCGTGCA TAGGCTTTAC GGTCCAGGCC GCTCCCACCC ACGCCCTTAC GGTCTACGGT
GAAGCCCCCC GCTACGCCGC CAGCTTCCGG CATTTCGACT ATGTAAACCC CTCCGCCCCC
AAGGGCGGCA TCTTGCGCCG TTCGGCCATC GAGATCGGCC AGTTCGACCA CATCCTCCCC
TATATCGACA AAGGCATCGG TGTCAGCGAA GTCGATGGCC TGCTGTACGC GCCACTGGCG
GTACGCTCTT ACGATGAACC CTATACCGTT TACGGCCTGA TCGCCCGGCG CATGGAGCGC
GGCCCCAATG ATGAGTGGCT GCGTTTCGAC ATCGACCCAC GCGCCACCTT CGCCGATGGC
AGGCCGGTGC GCGCCGAAGA CGTGCGTTTC ACCTTCGACC TGCTGATGAG CAAGGGCAGC
CTGAAGTACC GGACCCAGTT CGCCGACGTG GCCCGCGTGA CCGTAGAACG CCTGCACAGC
GTGCGATTCG ACTTGAAGCC CGAGCACGGC CGCACCCTGG CGCTGGACCT CGCCAGCCTG
CCGGTAATGC CCGAGCACGA CCTGCAGCAG CGCGACTTTG CCAACGGTGC CGGCTTCGAC
AAGCCAGTCG GCAGCGGGCC ATACCGCATT GGGCGCATCG ACAACGGCCG CAGCATCACC
TTCGAACGCG ACCCGGCATG GTGGGCACGT GACCTGCCCG CCAGCCGTGG CCGCTACAAT
TTCGACAAAC TGCGCATCGA GTACTTCGGC GACACCGAAG TGGCGCGCCA GGTACTCAAA
GGCGGTGGCT ACGACTACAA CCGCGAGTTC TCCGCCACGG CCTACACCTT GGGCTACAAC
GGTGCGCAAC TGGACGACGG CCGCCTGCAG CGCGCCCACC TGGGCCCGGC CAAACCGCAG
GTGGCCCAGG GTTTCGTGTT CAACCTCGAC CAGCCGCAGT TCAAGGACCG CCGTGTGCGG
CAGGCGCTGG GTATGTTATG GGACTTCGAG TGGAGCAACC GGCAGATGAT GCGCAACCTG
TACATCCGCC AGCAAAGCGT GTTCTCCAAT ACGCCGTTGG CCGCTCGCCA GTTGCCGGAT
GCGGGCGAGT TGAAGCTGCT CGCCCCCTTG CGCGGCCAAG TGCCAGATGA AGTGTTCACC
ACGGTGTTCA CTGCCCCGGT CACCGATGGC TCGGGGATCA TCCGTCAACA GCAGTTGCAG
GCCCTGGCCC TGCTCGAACA AGCCGGCTGG CACCCCGAAG GCGACCGCCT GGTCAATAGC
CAGGGCACGC CGCTGGCGTT CACGTTCCTC AATGGCCAGG CGGGCCTTGA ACGCCTGCTG
CTGCCGTGGA AGCGCAACCT GGCCCAGATC GGCGTGACCC TGAATATCCG CAACGTCGAC
TCGGCCCAGT ACGTCAACCG GTTGATGGCG CGCGACTACG ACATGATCGT CACCGGCTAC
CCGGTCACCC TGTCGCCGGG CGCCGAGTTG TACAACTACT TTGGTTCGGC GGCCGCTCAC
GACCCCGGCT CGAACAACCT GATGGTTTTG CAGGACCCGG CCGTAGACCA CCTGATCGAC
GGCCTGGTCC GCGCCGACAC CCAGGCCGAC ATGCTGCGCC ACGCCCATGC CCTGGACCGC
GTGCTGCAAT GGAATTACTA CTGGATCCCC AACTATTACC CACCGGGCAG CTCCACCGTC
TGGTGGAACC GCTTCGGCCT GCCCAAGGTC CAGGCCACCT ATGACGAGGG CCTGGACACC
TGGTGGGAGG TAAACCCTAC CCCGCTGACC AACGCGCAGA TGGCCGAACG CCGGAAGGCC
TCGCCATGA
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| Protein sequence | MISPPVGAGL PAKRPDQTTS LPAPTHSRVN PLPQVLWGLV FSCIGFTVQA APTHALTVYG
EAPRYAASFR HFDYVNPSAP KGGILRRSAI EIGQFDHILP YIDKGIGVSE VDGLLYAPLA
VRSYDEPYTV YGLIARRMER GPNDEWLRFD IDPRATFADG RPVRAEDVRF TFDLLMSKGS
LKYRTQFADV ARVTVERLHS VRFDLKPEHG RTLALDLASL PVMPEHDLQQ RDFANGAGFD
KPVGSGPYRI GRIDNGRSIT FERDPAWWAR DLPASRGRYN FDKLRIEYFG DTEVARQVLK
GGGYDYNREF SATAYTLGYN GAQLDDGRLQ RAHLGPAKPQ VAQGFVFNLD QPQFKDRRVR
QALGMLWDFE WSNRQMMRNL YIRQQSVFSN TPLAARQLPD AGELKLLAPL RGQVPDEVFT
TVFTAPVTDG SGIIRQQQLQ ALALLEQAGW HPEGDRLVNS QGTPLAFTFL NGQAGLERLL
LPWKRNLAQI GVTLNIRNVD SAQYVNRLMA RDYDMIVTGY PVTLSPGAEL YNYFGSAAAH
DPGSNNLMVL QDPAVDHLID GLVRADTQAD MLRHAHALDR VLQWNYYWIP NYYPPGSSTV
WWNRFGLPKV QATYDEGLDT WWEVNPTPLT NAQMAERRKA SP
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