Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3075 |
Symbol | |
ID | 1043815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3458913 |
End bp | 3460358 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146497 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | NP_745219 |
Protein GI | 26989794 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.353406 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.633528 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTTTC AGGCCTGGCC TTTTCGCGGG CTTGTGCCAA TACATGATTC AGGATGTTCA CCCATGCACG ACAGCGACAG CCTCAAGGAC TACCCCCAGG TACGGCAACT GGCGATCCGC TCGCTGTTCG AGATCATCGA ACAGTCCAGC GAGGGCACGG TGATCGTCGA CCGCCAGGCA CGCATCGTCT GGATGAACGA ACGCTACGCC CGACGCTTTG GCCTGGCCGA CGCTGCCAGT GCCATCGGCC AGCCGTGCGA AACAGTGATC CCCGGCAGCC TGATGCGCGA TGTGGTGAGC AATGGCCGGC CCATCCTGCT GGACATGCTC GACACGCCGA ACGAGCCGTT GGTGGTCATG CGCCTGCCCA TCCACGATGA CCAGGGCGCG CTGATCGGCG CCATTGGCTT TGCGCTGTTC GACGAACTGC GCAGCCTGTC GCCGCTGCTC AAGCGCTACG CCAGCATGCA GCAGGAACTG GCCTCGACCC GCTCGCAACT GCGCGCCCGC CAGGCCAAAT ACAGCTTCGC CCAGTTCGTC GGCAGCAGCG CGCCCAGCCT GGAAGCCAAA CGACGCGCCC GGCGTGGCGC CGGCAGTGAT TCGCCCGTGT TGCTGCTGGG CGAAACCGGT ACCGGCAAGG AGCTGCTGGC CCACGCCATT CACGCAGCGT CGGCACGGGC ACACAGAGCT TTTGTCAGCA TCAACAGCGC AGCCATCCCG GAGACGCTGC TGGAAGCCGA ATTCTTCGGT ACTGCGCCGG GTGCCTTTAC CGGTGCCGAC CGCAAGGGCC GCAGCGGCAA GCTGCAACTG GCCGAAGGCG GCACGCTGTT CCTCGACGAG ATCGGCGACA TGCCGCTGGC CCTGCAGAGC AAGCTGCTGC GGGTGCTGCA GGAAAAGGAA TACGAACCGG TCGGGTCGAA CCAGATGCTG CGCAGCGATG TGCGCATCAT TGCCGCCACC TCCATCGACC TGCAGGCTGC CATGGCCCGC GGGGCCTTCC GCGCCGACCT GTATTACCGG CTGAATGTGC TGCCGATCGA TGTTCCGCCG TTGCGGCAAC GGCTGGAGGA CCTGCCCGCG CTGTGCGAGG CCATATTGGC TGAGCTGGGC AGCCAGTACG AGCTGGAAGC TGAAGCGCAG CAACTGCTGG CCAGGCATGC ATGGCCGGGG AACATTCGCG AGCTGCGCAA TGTGCTGGAG CGCGCGACCC TGCTGGCGGA TCAGCCCCGG CTGGGGGTTG CGGACCTGCG TGCGGCATTG GGGCCATTGA GCCCGCTGGC TGAAGCGCCC GTGCGGCAGA GCTACCGTGA GGCCTGCGAG GCCTTTGAAC GCGGCCTGAT TGCCGGGGCG CTGGCCGAAC AGGGAGGAAA AGTGCCAGAG GCAGCGGCAG CCTTAGGGCT GGGGCGGTCG ACGCTGTACA AGAAGATGGC GGCACTTGGT CTCTGA
|
Protein sequence | MSFQAWPFRG LVPIHDSGCS PMHDSDSLKD YPQVRQLAIR SLFEIIEQSS EGTVIVDRQA RIVWMNERYA RRFGLADAAS AIGQPCETVI PGSLMRDVVS NGRPILLDML DTPNEPLVVM RLPIHDDQGA LIGAIGFALF DELRSLSPLL KRYASMQQEL ASTRSQLRAR QAKYSFAQFV GSSAPSLEAK RRARRGAGSD SPVLLLGETG TGKELLAHAI HAASARAHRA FVSINSAAIP ETLLEAEFFG TAPGAFTGAD RKGRSGKLQL AEGGTLFLDE IGDMPLALQS KLLRVLQEKE YEPVGSNQML RSDVRIIAAT SIDLQAAMAR GAFRADLYYR LNVLPIDVPP LRQRLEDLPA LCEAILAELG SQYELEAEAQ QLLARHAWPG NIRELRNVLE RATLLADQPR LGVADLRAAL GPLSPLAEAP VRQSYREACE AFERGLIAGA LAEQGGKVPE AAAALGLGRS TLYKKMAALG L
|
| |