Gene PP_3075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3075 
Symbol 
ID1043815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp3458913 
End bp3460358 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content65% 
IMG OID637146497 
Productsigma-54 dependent transcriptional regulator 
Protein accessionNP_745219 
Protein GI26989794 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.353406 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.633528 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTTC AGGCCTGGCC TTTTCGCGGG CTTGTGCCAA TACATGATTC AGGATGTTCA 
CCCATGCACG ACAGCGACAG CCTCAAGGAC TACCCCCAGG TACGGCAACT GGCGATCCGC
TCGCTGTTCG AGATCATCGA ACAGTCCAGC GAGGGCACGG TGATCGTCGA CCGCCAGGCA
CGCATCGTCT GGATGAACGA ACGCTACGCC CGACGCTTTG GCCTGGCCGA CGCTGCCAGT
GCCATCGGCC AGCCGTGCGA AACAGTGATC CCCGGCAGCC TGATGCGCGA TGTGGTGAGC
AATGGCCGGC CCATCCTGCT GGACATGCTC GACACGCCGA ACGAGCCGTT GGTGGTCATG
CGCCTGCCCA TCCACGATGA CCAGGGCGCG CTGATCGGCG CCATTGGCTT TGCGCTGTTC
GACGAACTGC GCAGCCTGTC GCCGCTGCTC AAGCGCTACG CCAGCATGCA GCAGGAACTG
GCCTCGACCC GCTCGCAACT GCGCGCCCGC CAGGCCAAAT ACAGCTTCGC CCAGTTCGTC
GGCAGCAGCG CGCCCAGCCT GGAAGCCAAA CGACGCGCCC GGCGTGGCGC CGGCAGTGAT
TCGCCCGTGT TGCTGCTGGG CGAAACCGGT ACCGGCAAGG AGCTGCTGGC CCACGCCATT
CACGCAGCGT CGGCACGGGC ACACAGAGCT TTTGTCAGCA TCAACAGCGC AGCCATCCCG
GAGACGCTGC TGGAAGCCGA ATTCTTCGGT ACTGCGCCGG GTGCCTTTAC CGGTGCCGAC
CGCAAGGGCC GCAGCGGCAA GCTGCAACTG GCCGAAGGCG GCACGCTGTT CCTCGACGAG
ATCGGCGACA TGCCGCTGGC CCTGCAGAGC AAGCTGCTGC GGGTGCTGCA GGAAAAGGAA
TACGAACCGG TCGGGTCGAA CCAGATGCTG CGCAGCGATG TGCGCATCAT TGCCGCCACC
TCCATCGACC TGCAGGCTGC CATGGCCCGC GGGGCCTTCC GCGCCGACCT GTATTACCGG
CTGAATGTGC TGCCGATCGA TGTTCCGCCG TTGCGGCAAC GGCTGGAGGA CCTGCCCGCG
CTGTGCGAGG CCATATTGGC TGAGCTGGGC AGCCAGTACG AGCTGGAAGC TGAAGCGCAG
CAACTGCTGG CCAGGCATGC ATGGCCGGGG AACATTCGCG AGCTGCGCAA TGTGCTGGAG
CGCGCGACCC TGCTGGCGGA TCAGCCCCGG CTGGGGGTTG CGGACCTGCG TGCGGCATTG
GGGCCATTGA GCCCGCTGGC TGAAGCGCCC GTGCGGCAGA GCTACCGTGA GGCCTGCGAG
GCCTTTGAAC GCGGCCTGAT TGCCGGGGCG CTGGCCGAAC AGGGAGGAAA AGTGCCAGAG
GCAGCGGCAG CCTTAGGGCT GGGGCGGTCG ACGCTGTACA AGAAGATGGC GGCACTTGGT
CTCTGA
 
Protein sequence
MSFQAWPFRG LVPIHDSGCS PMHDSDSLKD YPQVRQLAIR SLFEIIEQSS EGTVIVDRQA 
RIVWMNERYA RRFGLADAAS AIGQPCETVI PGSLMRDVVS NGRPILLDML DTPNEPLVVM
RLPIHDDQGA LIGAIGFALF DELRSLSPLL KRYASMQQEL ASTRSQLRAR QAKYSFAQFV
GSSAPSLEAK RRARRGAGSD SPVLLLGETG TGKELLAHAI HAASARAHRA FVSINSAAIP
ETLLEAEFFG TAPGAFTGAD RKGRSGKLQL AEGGTLFLDE IGDMPLALQS KLLRVLQEKE
YEPVGSNQML RSDVRIIAAT SIDLQAAMAR GAFRADLYYR LNVLPIDVPP LRQRLEDLPA
LCEAILAELG SQYELEAEAQ QLLARHAWPG NIRELRNVLE RATLLADQPR LGVADLRAAL
GPLSPLAEAP VRQSYREACE AFERGLIAGA LAEQGGKVPE AAAALGLGRS TLYKKMAALG
L