| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3016 |
|---|
| Symbol | |
|---|
| ID | 1043136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3404647 |
|---|
| End bp | 3405480 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637146438 |
|---|
| Product | lipopolysaccharide core biosynthesis protein, putative |
|---|
| Protein accession | NP_745160 |
|---|
| Protein GI | 26989735 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.567321 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0985209 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTTGTA CTGTCCAGTT GAAGATGCCA TTGATGAACA CACTTCCCTC GCAGCCAAGC
GCTGAACGCG GGGCGTTCTC CGGTTTCGAG GCGTGTCGCA ATTCCCAGCA GGGCCCCGTG
GTGATCCTTG CCTCCGGCGC TTCTGCCAAA CATTTTCCGC TGGGCGAGTT TGCGCACTTG
CCCATCATCG CCATGAACGG GTCGGTCGCC ATGACCGCCG AACACGGCAT CAAACCCTTC
TTCTACGTGT GCACCGACAA AAGCTTTTGC CAGCAACAGC CGGCCTTGTT CGCCACTGCC
GTGCGCGACA GCGAACGCCT GGCCCTGTGG CCTGAGCAGT ATGCGCGTGC CGATGTGCCA
GCCCACACCC AGTGTTATGC CTTGCACAAA GCCGACATGC CGAGCCTGCT GGACGGTTTG
CGTGGCCATG GTGACAGTTG CGTGTGCAAC CGGGCACTGT GGAGCAAACG CAGCCGCTCG
ATCGCCTTCA GTAAAGACAT GGCCCATGGC TTTTTCGATG CCCGCACGGT GGCTTATGTG
GCCTTGCAGT TGGCCTATCA CCTGGGCTTC GAGCAAGTGT TGCTGGTGGG GGTAGACCTC
GACCAGAGCG TCGGGCGCTT TTACGAGGAC GGCCAGGGCC CGTCTTCGCC GTGCGGACTC
GACCAGCATT GGGACAGCCG CATCCTGCCG TCGTTGAAGC TGATGGCCAG GGAAGTGGTC
AGCGAGCATT TCCATGTCTA CAACCTGTCG GCAACATCAC GCATTCCAGC TGAGCTGATC
CCCAAGGTCA CGCTCAGCCA GGCGCGGCAC ATTGCCGGCT GCGCAATGAA CTGA
|
|---|
| Protein sequence | MVCTVQLKMP LMNTLPSQPS AERGAFSGFE ACRNSQQGPV VILASGASAK HFPLGEFAHL
PIIAMNGSVA MTAEHGIKPF FYVCTDKSFC QQQPALFATA VRDSERLALW PEQYARADVP
AHTQCYALHK ADMPSLLDGL RGHGDSCVCN RALWSKRSRS IAFSKDMAHG FFDARTVAYV
ALQLAYHLGF EQVLLVGVDL DQSVGRFYED GQGPSSPCGL DQHWDSRILP SLKLMAREVV
SEHFHVYNLS ATSRIPAELI PKVTLSQARH IAGCAMN
|
|---|
| |