| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2413 |
|---|
| Symbol | |
|---|
| ID | 1045540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2759305 |
|---|
| End bp | 2760939 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637145836 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | NP_744561 |
|---|
| Protein GI | 26989136 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACTG CCGGCCAAGG TAACTTCCGT TCAGCCGCCC TTTACGATCA CCCGAGGTCA
GGATTGACAC ACACCAAGCA TGGATTGCGC CTGGATCTAC GTACACTCAT TCTGGTGCTC
TGCGCCCTCA CCGCAGTGGT CATGCTGTGC GCCAGCTATT TCGCCAGCTA CCGGGTGCAG
CGCCAGCTAT TGATCGACAA TGCCCTGGAA GCCAACCGGG TGTATGCGAC CAAGCTGGCC
AGCATCACCG AAACCTTCAT TGGCAACGCC TTGCAGCAAC TGATGTTCAG CGCCAGCGTA
CAAAGCCGGC AGTTGAGCGA TGCCGCTGCG CTGCAGGTGG AAAGCGATCG CGTACTGGGC
CAGAGCATGG CCTTCAACTC CACCTTCGTG ATCGACGCCA ACGGTGTACT GCTGGCAGTA
TCCCCCGCCC CGCTACGCCA CCTGGTCGGC ACCCACGTGC AGTCTCCCGG CGCCCTGGAA
GCCCTGCACG AACGCCGTCC ACTGGTTTCC ACGCCCTACC TGTCGGCGGC CGACAACCTG
GTGGTCGCGC TGTCGCAACC CATTTTCGAT CGCGACGGCC GCTACCTGGG GTATGTGGGT
GGCAGCCTGT ACCTGCGTGA ACGCAACATC CTCAACAGCC TGCTGGGCGA GCATTTCTAC
AAGGACGGTT CGTACCTGTA TGTGGTCGAC CGCAACCGAC GCCTGCTGTA CCACCCTCAT
AGCGAGCGGG TAGGCACGGT GGTGGAGGGC AATGCGCTGA TCGACCAGAT GGCGACACTG
GACAGTGGTA CCCGGCAGCT GACCAATAGC CTGGGCGTGG AAATGCTCGC TGGCTTCGCC
ACTGTGCCCA GCGCCGGCTG GGGCGTGGTA GCGCAGCAGC CCTTGGTGCA GACGGTGGCG
CCGTTGCACC ACCTGGTGCT GAACGTGATC GCCAGTTCGG CGCCCTTGGC GCTGGTTGGC
AGCCTGCTGC TGTGGTGGCT GGCCCGTACC ATCGCCCGCC CGCTGTGGAA ACTCGCCGCC
GGTGCCCGCA CGATGGACCG CGCCGGTACC GCCGAGCATT TGCATCAGGT GCGGGCCTGG
TACTTCGAGG CGGCCGAGCT CAAGCGCGCG TTGCTGTTCA GCCTGAACTT GCTGCAAGAG
CGTATCGGCC GGCTCAATCG GGACGCCCAG ACCGATCCGC TGACCGGCCT GGGCAACCGC
CGCAGCCTGG AAATCAGCCT GTCGTTACTG GAGGCTGAAA AGCGGGAGTT TGCAGCCATT
GCGCTGGATA TCGACCACTT CAAGCGGATA AATGATAGCC ATGGACACGA CGTGGGCGAC
CAGGTACTGC GCCAACTGGC GGAGCTCATG CGCCGTTGTT GCCGCGAGGG GGACCTGTTG
TGTCGCACCG GCGGCGAGGA GTTCCTGATT TTGCTGCCTG GGGCCACCCT GAACGTGGCG
GCCGCGGTGG CCGAACGGTT GCGTGTGACC GTACAGGAGA TGCCAGTGGA ATCGGTGGGC
GCCGTGACGA TTTCGCTGGG GGTGACGCAC TGGGATGGCG AGACTCACGG CGAGCCCATG
AGCGCACTGG GCGAGGCTGA CCGGGCGCTT TACCGGGCCA AGCAAGAGGG GCGCAACCGG
GTCGCTTTTG CCTGA
|
|---|
| Protein sequence | MSTAGQGNFR SAALYDHPRS GLTHTKHGLR LDLRTLILVL CALTAVVMLC ASYFASYRVQ
RQLLIDNALE ANRVYATKLA SITETFIGNA LQQLMFSASV QSRQLSDAAA LQVESDRVLG
QSMAFNSTFV IDANGVLLAV SPAPLRHLVG THVQSPGALE ALHERRPLVS TPYLSAADNL
VVALSQPIFD RDGRYLGYVG GSLYLRERNI LNSLLGEHFY KDGSYLYVVD RNRRLLYHPH
SERVGTVVEG NALIDQMATL DSGTRQLTNS LGVEMLAGFA TVPSAGWGVV AQQPLVQTVA
PLHHLVLNVI ASSAPLALVG SLLLWWLART IARPLWKLAA GARTMDRAGT AEHLHQVRAW
YFEAAELKRA LLFSLNLLQE RIGRLNRDAQ TDPLTGLGNR RSLEISLSLL EAEKREFAAI
ALDIDHFKRI NDSHGHDVGD QVLRQLAELM RRCCREGDLL CRTGGEEFLI LLPGATLNVA
AAVAERLRVT VQEMPVESVG AVTISLGVTH WDGETHGEPM SALGEADRAL YRAKQEGRNR
VAFA
|
|---|
| |