| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2394 |
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| Symbol | |
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| ID | 1045430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2733100 |
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| End bp | 2737521 |
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| Gene Length | 4422 bp |
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| Protein Length | 1473 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637145817 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | NP_744542 |
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| Protein GI | 26989117 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.408404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACA ATAGCAGTCA ACCATCGGCT GCGGTCGATA CCCTTGCCAT GGCACAAGCA
TGCCAGGACC ACTACATCGC ACAGCGGTTG CCGGCCTGGA TGAAGCGGCT GAGCATGGCC
GAATTCACCC TGCTGAGCGA GGCGCTGCCT GAACTGCTGG CCTGCCGTGC AGGCTTGGCG
TCAGCGCTGG CGCGGCTAAG CAACCTGAAT GCATTTGCCC GGCCCTTGCT GCAGCAAGCG
CTCGGTGCCC ACGGCGACCT TGATGTCGAT CGCCTGTACT TTCGCCAGTG GTACACCTTT
CCCTCACACA CGATCCATTA TGTAACCAGT CGGTTTCCGG TTGTCGGCAG CGACTACTAC
GACATTCCTC TGCTCGAGGC CGCTTTGTGC AATTTCACCG CAGACCAGCA GCGCGACCAG
CCACAGGGCA ATTGCCTGGT CGATGTGCGC GGCGCAAGGC GTAGTGAACT GTCTGCACCG
GGCTTCGCCA GGCTGTGTCG AGCGCTGGAT CTTGGGCAGA AATACCAGGC GCATCTGGAT
TCGGTACTTC AGCCCGAAGT CAGGGGATTG CTGACGCGAC GGCAACGCTA CAGCATGCTG
GTGGATGCCC TGCAGGCCAG GGCGCAGGGC ATATTGAGCG CAGACGAACT GCAGTGGGTG
GTGGCGCTGT GCACCAAGGA CACGCTCGGC AAGCTCGAAG GCGCCTCGGT TCGCGTACGC
CAGTTGGCGG TGTTCGGTTG CCGCTTGCAG CAAATCGTCG TGCTGGACGT GATCGACGCA
GGCTTGCTGT TCAACACCAG CAAGCGCGTG CTGGTCTATG TACCGGGTGA CCCGCACGGC
CCCTGGAGCG TGCGCAGCGA CCTGGAAGAT TATGCCCGCC GGGTGCTTGG CAAACGCCTG
CGCGAAGATG ACTACCGGCG CTTCTTCAAC CGCTTCGTGC GCCGACGCGA TAGCCAGCGA
TTCTTCTCGG CCGTCAGTGA GCGCCTCGAT GACGTGCCCA GCTGGGCTAC CCGGGACCTC
GATGAGCAGA CCTTCGCCTA TCGCCTGCCA TTGTTCGAAC ACCTTGCTGA CGACTGGGTC
GCGCGGATCA AGGACGATGC TGCGATGATC GCGCCGCCCG TGGCCTTGCT TGATCGCGAG
GTCCAGGCCG AACACGCCCG CCGTTTGCGT GCTGAAGGCT GGACCCTGTT GGGTGTTGCA
GGGTTCTTCG TTCCTGGCAT CGGCGCGGTG TTGTTGGGGG TGATGGCCTG GGAACTGCTT
GAGCAGACGT TCCAGGCTGT AGGGGACTGG CAGGAAAACG AGCGCAATGC AGCGCTGGCG
CACCTGCTGA ATGTAGGCAA AGGGCTGCTG GCTGTCGGGG CAACCGTTGC CGTAGTCGCC
ACGGCCCGAC GCGCCTGGAG TGTGGTGGAC AACCTGGTAC CGGCGCAGCT GGAAAACGGT
GAGGAAAAAC TGTGGAACGC AGACCTCGGC CCCTATCGCT GCGAAAGCCC GCCAGACACG
GCGGTGCCGG ACATGGAGGG TGTGCACCGT GTTGGCGAGC GCCGCTGGAT CAGCATGGAC
GGGCACTGGT ATGAGATGAC CTGGCACAAT GACGATGAAC AGTGGCAATT GCTCCCTTAC
CAGGGCTATG CGCCGCCGCT CCGTCACAAT GGGGCCGGTG CGTGGCGGCT GTGGTGCGAA
CAGCCCGCCG AGTGGGGCGA CACACGCCAG TTGTTCCGCC GCCTGGGCGG GTCATTCAGC
GACCTCGACG ATGCGCAGAT CGACCGGTCG CTGGCGATTC ATGGCCTGGA TGATCAGCAT
CTGCGGGCAT GGCATGTGTA TGGCCGACCG CCGGAGGCCG CGCTGCTCGA CACCGTCACG
CGCGTGCGGC TCGCCGGCAG GATTGGTACG TTGGTCAACC AGTTGCGCGA GGGCGGTGTA
ACCGCAGACC CGCAACTGCT GGAGCGGGTC ATGCGCCTTC CACAAGCCGC CGGCAAGGAA
GGAGCAGCGT TGGCCGATGT GGCTTGGGCC GGGCGACGAG AACTGCTTCA GGCGTTGTAC
GAAGAGCAGA ATCCCGACAC TGAAACTGGC CGCCTCTTAC GACAGAACTT TGCCAGCCTG
CACCGCTTGG CCGCGGATGA GGTGCTGCGC GATGCCAGCG AGGATGACCT GCAGCTTTTG
CGTGAGACGG GGCGTGTGCC GTTGCTGATG GCCGAGGCAG CAAGGTTGCA GGTTGCGCGG
ATTCGAATGG CGCGGGTGTA CGAGGCGCTG TGCATCGATA CGCCGCAAAA CCTCGACCTG
GCACGTGTGG TCCTGAATCT GCTGGTGCAT GTGCCGGGGG CTGGCGGGCC GGGGTGGCGA
TTGTACGACG GTGATGCCAG CGAGCCGTTA CTGACGGTCG AGGGATCGGC GCAGACGTTC
GACCTGCTTC ATCGTCATGG GCTGTTCCGC CTGCGTGCCC CAACGCACAC GGTTGCCGGT
GAGAGGGGGG AGTTGTTCGA GACCTTGGCA GCAGCCTATG ACGACGCATC GCAAGCGGCC
ATCGGCCAAG GCCAGCCCTT CGTGCCTGCG TTGCGCCAGG CGCTGACCAA CGTGGCTTTC
GACCAACGCC AGACCGTGGT GAACCTGCTC AGGCTGGAAC AGCCGAGCGG CTCGTTTCTC
GCGCCGCAAC GTCTTGCTGA TGGCCGGATT GGTTACCCCA TGGCGGGCGG CAGGCTCTGG
GGGGCGTTAG GGCGAAACAG GCCAAGGGCG CTTCAGGCCC GGTTGCGAGA CCTGTACCCG
GCCTTTACCG ACGAACAGAT CGGGCGCTGG TTGGCCTCAA TTGACGCGCA GGCCAGGTTA
TCCATGCTGG AGCAGCAATA TGGGGTGCTC AAAAGGCACT TGACCCAGTG GGCACGCAGT
GCCTTGCTGT CACCAGAACT GGCCGCCCGG CGTGAGTTCA GGAAGGGGCT GATCAACTGC
TGGCGCTGTC TTGTGCCGGA ACTGCAAGGG CAAGCGGCAC TGGATGACGG GCGCTTCATG
CTGACCCAGA CCATCAGCCG CTTGCGCCAT CTGCCGGCCC TGCCCGCGCA AGTGGGCTTT
CCCCACGTCT CGATCCTGGC CTTGCGCGCC ATGCGCGTGG AGCACGTTCC GGATGAGTTT
CTGCGGGCGT TTCCCAACTT GCGCAACCTG GAAATCACCC ATTGCCGACT CACGCGTTTG
CCATTGCCTT TGATGCTTGC CCAGAAGCTG GAGGTACTCG ACTTGTCCGG TAACCAGATC
ACGCTCGACC AAGGCCAGGC GTTGGTCCTG GCAGATTGCC GGTCCCTGGT GTACCTGAAC
CTTTCGGACA ACCCGTTGCG CAGGGCATTT TCCGTCCAGG CAATGACCGA ACTGAATGCC
CTCTACCTGT CAAACACCCA GATGCCCGGG TTTCCCTACG GGCTGATGGA CGCGCCAGAA
CTGCACACCC TGAACCTCAG CGACAACCGT ATTTCTGAAC TGCCCGAGGG TTTTCATCAG
TCGCAGTTGT GGCGTTCGGG CAGGGTCGAG CTTTCCGGCA ATCCGCTGGA AGGCGCGCAT
GACGGGGTTT CAACCTGGCA TTTGCTTGAG GCCAGTCGCG TGCCTTACCG GTTGCGTATT
CTGGATGCGT TGCCTGGCGA ACGTCGAGAT GAAATGGCTG CACTGTGGGC CCATCTGGAG
GCCGAGCAGC AATCGGAAGA GTTTTTCAAT ACCCTGTCGA TGCTGACAGA ATCCGGCGCC
TTCAGTTTCT CATCGACTGC ATCCGCGTTG GCGGCCCGTG TGTTCGACAT GCTCCAGGCG
ATGTCTGAGC ATGATGTCCT CAGGCAAGAG CTGTTCGAGC ACGCAGCTGC GACCGGTTGC
CAGGATAACG CCACCGCACG TTTCGCCGAC CTGGAACTGC GAGTGATGAT ATGGCGCACG
AGGCACAGCG GATCTGCCCG GCCTGAGCGG GCCTTGCTGA AGCTCGGTGC CCGGATGTGG
CGGTTGGCGG TGCTTGAGCA AATTGCCGCT GAACATGCTT ATCGGGTGGG GGCGGGCGCT
GAATCGATCG AATTCGCCTT GGCCTATCGA ATCGGCTTGC GCAAGTCTCT GGACTTGCCT
GGCCAACCCG ATGAAATGCT CTATGCAGGG ATCCCTGCCT TGAGTAACCA GGACCTTCTC
CTGGCCCGTG AAAGGGTCCT GGCGCGACAG ACCCGGGAGG GCATTGCTGA TTACCTGTCA
CGCCAGTGGT TCTGGCAGGA TTACCTGCAC AAGACTTTCC CGGTTCGCTT GCAAGTGCCA
CCCTCCATGC ACGCTGAACT GGAACGGCTG ATGGCGTTGG GAAATCGGGA AGAGGATATC
GCACGGCTGC AGACCAGCAA CCAGCAACGC GAGCATGCGG TGTTGCTGCA GTTGACGCTG
GAGGCGCTGG ACCGGAATAC GGTGCAGCGT CCGCTCAGCT AG
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| Protein sequence | MQNNSSQPSA AVDTLAMAQA CQDHYIAQRL PAWMKRLSMA EFTLLSEALP ELLACRAGLA
SALARLSNLN AFARPLLQQA LGAHGDLDVD RLYFRQWYTF PSHTIHYVTS RFPVVGSDYY
DIPLLEAALC NFTADQQRDQ PQGNCLVDVR GARRSELSAP GFARLCRALD LGQKYQAHLD
SVLQPEVRGL LTRRQRYSML VDALQARAQG ILSADELQWV VALCTKDTLG KLEGASVRVR
QLAVFGCRLQ QIVVLDVIDA GLLFNTSKRV LVYVPGDPHG PWSVRSDLED YARRVLGKRL
REDDYRRFFN RFVRRRDSQR FFSAVSERLD DVPSWATRDL DEQTFAYRLP LFEHLADDWV
ARIKDDAAMI APPVALLDRE VQAEHARRLR AEGWTLLGVA GFFVPGIGAV LLGVMAWELL
EQTFQAVGDW QENERNAALA HLLNVGKGLL AVGATVAVVA TARRAWSVVD NLVPAQLENG
EEKLWNADLG PYRCESPPDT AVPDMEGVHR VGERRWISMD GHWYEMTWHN DDEQWQLLPY
QGYAPPLRHN GAGAWRLWCE QPAEWGDTRQ LFRRLGGSFS DLDDAQIDRS LAIHGLDDQH
LRAWHVYGRP PEAALLDTVT RVRLAGRIGT LVNQLREGGV TADPQLLERV MRLPQAAGKE
GAALADVAWA GRRELLQALY EEQNPDTETG RLLRQNFASL HRLAADEVLR DASEDDLQLL
RETGRVPLLM AEAARLQVAR IRMARVYEAL CIDTPQNLDL ARVVLNLLVH VPGAGGPGWR
LYDGDASEPL LTVEGSAQTF DLLHRHGLFR LRAPTHTVAG ERGELFETLA AAYDDASQAA
IGQGQPFVPA LRQALTNVAF DQRQTVVNLL RLEQPSGSFL APQRLADGRI GYPMAGGRLW
GALGRNRPRA LQARLRDLYP AFTDEQIGRW LASIDAQARL SMLEQQYGVL KRHLTQWARS
ALLSPELAAR REFRKGLINC WRCLVPELQG QAALDDGRFM LTQTISRLRH LPALPAQVGF
PHVSILALRA MRVEHVPDEF LRAFPNLRNL EITHCRLTRL PLPLMLAQKL EVLDLSGNQI
TLDQGQALVL ADCRSLVYLN LSDNPLRRAF SVQAMTELNA LYLSNTQMPG FPYGLMDAPE
LHTLNLSDNR ISELPEGFHQ SQLWRSGRVE LSGNPLEGAH DGVSTWHLLE ASRVPYRLRI
LDALPGERRD EMAALWAHLE AEQQSEEFFN TLSMLTESGA FSFSSTASAL AARVFDMLQA
MSEHDVLRQE LFEHAAATGC QDNATARFAD LELRVMIWRT RHSGSARPER ALLKLGARMW
RLAVLEQIAA EHAYRVGAGA ESIEFALAYR IGLRKSLDLP GQPDEMLYAG IPALSNQDLL
LARERVLARQ TREGIADYLS RQWFWQDYLH KTFPVRLQVP PSMHAELERL MALGNREEDI
ARLQTSNQQR EHAVLLQLTL EALDRNTVQR PLS
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