| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2212 |
|---|
| Symbol | |
|---|
| ID | 1045075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2518747 |
|---|
| End bp | 2523192 |
|---|
| Gene Length | 4446 bp |
|---|
| Protein Length | 1481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637145626 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | NP_744361 |
|---|
| Protein GI | 26988936 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA ACGCGACGGG CCATGACCGA TTCATCGGTG CCCGATTACC TGAGTGGCTC
AAACGCGCGT CAAGGGGCCA GATCAACACC CTGCGCACCA GTCTGAACGC GCACCATGCC
AGCCAGGCAC GCTTGAGTGG CCTGACGCTT GAGTTACTGC CGCTCCAGCA GTTTGCCGAG
AAGCACCTGG CGGCGTTGCT GGATGCACCG TTGCCGGACG GGCAGGTATT TGCCCAGCTC
GAGTGGCTGC GGGTGGCGCC ACGCTTCGGC ACACTGCCAG GTACCTTGCA ACAGACATAC
GGGTACAGCC AGACGCGTGA GAACGGGTTA CTGCGGCTTA TGCGCAACTT TGCTGCGAAT
ACCCGCTACT ACGAGGGCAC GGGGCTGGTT TTGTCAGGCA GCGATAAACC ATTGAATGCA
TCGCTGGAAG CATTGATTAC GGCCTGTCGC AATCTGGACG TTGGTCAGCG TTATCAGGAC
GCGTTGCAAA GGATCTTCCC GCCAGCTACC CAGGCGGTGC TGGCTGAAGA CAAACGTTCG
GGGTTGAAGC TGGCGACCGA GCTTGCGGCA TTGCAGGGAA ACATAAGCGT CGATGTGCAG
CTCGCCTTGC GTGAGGTGGT GGACCCCGCT CAGGAGGGGC GACAAAAAGG CCTCGAAGGC
AAACCCATGC TGTTGAGGGC AATAGGGAGA CCTGTGGTCG ATGGCTTGCT GATTCACTTG
CAAGACAAGG CGGGAAATGA ACGGGGCATC GTGCTTTACC TGCCTGGTGA TCCCCGGCAG
GCATTGCGGT TCTTCGACAA TGTCGCCTCC ATGAACAGTA CCGTGGCAAT GTTGTTGCAA
GATCCGGGTT ACTGGCAGTT CTTCACACAG CTCATCAGCC TTGAGCACCG TGCAGGTTTT
GTCAGTACCC TCGGCAAGCG CCTGAAAGAC AAGCTGCCGG ACCTGGAGCT TGAGGGTGAA
ACACCTGGGG GAGGGGTTTT CACGCAACTG GCGACTCGGC AAGTGCAACG GGTCAAGGAA
GATGCCCGGT TGCTGCTGGT ACCGACCGCT GACGCTGATA GCCGGGCGGT TAGCGCCAGA
CACGCTGAGT GGAAGGCGGC AGGTCTGGAC CTGGTAAACC TCGCCGGCCT TTTCATCCCG
GCTGTGGGGG GCGTGCTGCT GGGGCAGGTG GTTGCTCAGA CGTGCGCTGA AGTGTTCGAA
GGGATGAGGG ATTGGTCGAA GGGGCACCAA CACGAAGCGC TGCAGCATCT GCTGGGGGTC
GCCGAAACCT TGGCGGCTAC CGCAGCGACG GTGGCGGGTG TCAGTTTTGT GCGCAGTGCG
TTTGTCGCGG GCCTGGAGCC GGTAAGCCTT GGGAATGGGC GCAGTCGCCT GTGGCAGTTC
AACGCCAGAA ATTATCGATC ATTGCCGGGC CCTGTCGATC TGCTCGAGGA GGAGCGCGGT
GGCGAGGCGG GCCGCCGCTG GGTCCGTATC GATGGACGTT ACCTCGAAGT GCATCAGCCC
GTCGTCGATG GCCCCTATCG CCTGCGCCAT GCAGCGAGTG AGGGTGGCTA CGGGCCGGTC
GTGTTGCACA ACGGTGAGCG TGGCTGGCAG CTGATGCGTG AACAACCCTT AAGCTGGCAG
GCGCCTGCCC GCATGCTGGA TGCATTATGG CCACAGCTTT CCCCTGTCGA CGCGCATCAG
GCCGAGCAGA TAATGCGGGT GGCAGGTATC GATGCAGACT TGTTGCGCGG CGTTCTCGTG
GAGAATCGCC CGGCGCCGGT GAGCCTTGGC CAAACCTTGC GCGCCTTCCA GGCGCATGCA
CGCATTGAAA GGTTTTTCCA GCGTGTTCGG CTGAAGGCGT TGATGCCATC GGACAGGGAG
CTGCTGGCCT GGTGTGAAGC AAGGCCAGGC GTGGGCGCCG GACTGGAGCA GATGCAGGTG
CATGAGGCTG GGTTGCGGCC GCAATTGTTT GCTCGCCTGA CAGAACAGTC ACTGGCAGCA
GACCCGCTGA GCATGTTGGT AAAACGGGAC TTCCCGGGTT TGCCTTCGGC CTACATAAAT
GAAGTAACCG GTCAGGCGCA TGAGCTTGAG CACCAAATGG CGCGTGTCGA GCGGCGGCTG
CCATTGCCGT GCGCGAAGAA CGCCCGTTCG CTCTTGCGTC TGGCTCGCCT GAGCCGGGGG
CTGGCGGGGT TGTATCTGAG CACGGCGTAC AGTGATGTCA CCGGCGAACT GGCCCTTGCG
TTGCTGGATA GCTTCGAACT CGAGCAACTT GACCTCGACT TGCGCGACCG CGGGCTGGAT
GGGCGGTCTA TCAGGCGCCT CGGTAGCGGC GGGCGAACCG AGGCAAGAAG AATAGTGGTC
AGGCATGAAG GCAGGTTTCT GATCTACAAC GGGTCAGGTT TGCCACACGT GTTTATCGCT
GACGAGCCGG GATGTATCTT CGAGGCGCTT TCTGCCGCAC TGACATCAGA GCAGCGGGCA
GCGATGCAAC TGGTGGGCAG TGCGGCGGCG AGGCAACTGC GTGAGAAGCT TCTGGCGCGG
TTACCCGCTA CCCATTGGGA TATCGCGCGC ATGCTCGGCT GGCCAGAGGA GCAGGCCTGG
CTCAATCCAG GGCGTCGCAT GGACGATGGG CGCGTGGGAT ACCCGCTCAG TGGCCGCCCT
GGCGCTGCTC CCAGGGATGA GCGAGCGATC ATTCGCGATC AGCTACGATC GCTTTATCCT
GGCCTGGACG AGGCCGCGCT CGATGTGGAG CTGGCGCGCG TGCAACAAGG CCCGCAGCCA
GTCTTCGAGC GCCTGGTAGA ACTGCAGGAA GCGCATGACC AGCTAGTGCT GTACCTCAAC
CGCTGGGTCG GTGCCGAGTT GCAGGAGGGG CGACGCGCCG CCCGCAGGTT GACGGCCGAC
AGCATCCTGC GAGCCTGGCG ACTGCAGGGC GAGCCTGTTT CGGCCGGCGA GGGGCAAACA
CAGGGGCAGC GCTTGTCGAT GAGCGGTTTG AGTTTGCGCA CACTGCCAGC ACTACCGCCG
CATATCGATT TCCATCGCAT TACCCTGCTG AGCGTGAACG ACACCCTGAT TACTGACATT
CCGGCCGACT TCCTTCGCCC GTTCACTGCC TTGACGCACC TGAACCTCAA CAACAACGCG
TTGATGCGTC TACCAACAGG CATTGCCCAT TTACCGAATC TTCAATCGCT TCGGTTGGCG
CATAACGAGA TACGCCTCGA CGCCCAGGCG ATCAGCGTTC TGCATGGTTT GTCCAACCTT
GTGCATCTTG ATCTCAGTCA TAACCGGCTG GAAGCGCTGG ACATGAGCTT CCACCAACTT
TCTCGGCTGA CCAGCCTGAA CCTGCGTCAT TGTCGGCTGG GCAGCTGGCC GCGTCGCCTG
GAGCTCTGTG GTCTACTTGA ACGTGCTGAC TTGCGCAACA ACCAACTCCG CGAAGTGCCC
ACCGAGATCC AGCTGATGCC TTATGCATTT CGACAGGCCA TTCTGATGGA GGACAACCCC
TTGTCGGTCA TGCAGCAACG AAGGTTGTAT GCCCTCGATG TGATCGAAGA ACACCGGCAC
TCACCTGAGC AGTTGGGGTC AGTTGACCTG GCCAGGGCCC GTACGCGTTG GGTAGGCCAT
ACGGATGCGA CGGTTCAGGC CGAGCGTGAG GCCGTGTGGC TGCGGTTGCT GGAGCAAGCG
GGTAGCAGCG GGTTGTTCAG GTTGTTGGCT CGCCTGGAGA TGACTGCGGA CTACAGCCAA
GCGGGTGAAG GGCGGGATGC GCTGGTTGAC GGCGTATGGA CACTGCTGGC TACGCTGGAC
GGCGACCCGG TGCTGTGCCG GCGGATTTTT GAGCGGGCCG GCCTGCCGCT GTCATGTTTG
GACGCCGTTG CCAGCCATTT CAGTGCATTG CAGGTATTGG TGAGGCAGGC GCAGGCCGAA
GCCGCCGCAG TCAACCCTGA ACGCAGGGGC GAGTTGCTTG AACTGGGCAG GCAACTGTTC
CGGCTGGATC AACTGGAAGG GATTGCCTAC CAGGATGGCC GGCAGCGTCT GGCTGCCAGT
GAACATGTCG ACCAGTTGGC ATTGGGGCTG GCTTACAGGG TGCAACTTCG TAGCCGTTTG
CGGTTGCCCA ACCAGCCGTA TGCCATGCGC TATCCCGATG CTGTCGCGCT GACACAGGCC
CAGGTAGAGG ATGCATTTCT GCGGGTTACG CGCGCGCAGA CCATCGAGGG CCTGACCGAT
AGCCTGAGCC AGCGCGCGTT CTGGCGCCGT TACCTGCGCC AGCAACATGA CCAAATGTTC
GATGCCCTCA GTGCGGATTA CACTCGGCGC ACGCTTGAGC TGCAGGCTCA ACGTCCTGTC
TTGGCGCCGG CGGCCTTCGA GCAGCAACTA CGCCGGCTAC AGGAACAGCA GGACCTCGAT
ATCGAGCGCC TGGTCGCAGG GCTCACCCAG TCCTACCTGC GTGCAGCCGA GCGCGCAGAG
GGGTGA
|
|---|
| Protein sequence | MIINATGHDR FIGARLPEWL KRASRGQINT LRTSLNAHHA SQARLSGLTL ELLPLQQFAE
KHLAALLDAP LPDGQVFAQL EWLRVAPRFG TLPGTLQQTY GYSQTRENGL LRLMRNFAAN
TRYYEGTGLV LSGSDKPLNA SLEALITACR NLDVGQRYQD ALQRIFPPAT QAVLAEDKRS
GLKLATELAA LQGNISVDVQ LALREVVDPA QEGRQKGLEG KPMLLRAIGR PVVDGLLIHL
QDKAGNERGI VLYLPGDPRQ ALRFFDNVAS MNSTVAMLLQ DPGYWQFFTQ LISLEHRAGF
VSTLGKRLKD KLPDLELEGE TPGGGVFTQL ATRQVQRVKE DARLLLVPTA DADSRAVSAR
HAEWKAAGLD LVNLAGLFIP AVGGVLLGQV VAQTCAEVFE GMRDWSKGHQ HEALQHLLGV
AETLAATAAT VAGVSFVRSA FVAGLEPVSL GNGRSRLWQF NARNYRSLPG PVDLLEEERG
GEAGRRWVRI DGRYLEVHQP VVDGPYRLRH AASEGGYGPV VLHNGERGWQ LMREQPLSWQ
APARMLDALW PQLSPVDAHQ AEQIMRVAGI DADLLRGVLV ENRPAPVSLG QTLRAFQAHA
RIERFFQRVR LKALMPSDRE LLAWCEARPG VGAGLEQMQV HEAGLRPQLF ARLTEQSLAA
DPLSMLVKRD FPGLPSAYIN EVTGQAHELE HQMARVERRL PLPCAKNARS LLRLARLSRG
LAGLYLSTAY SDVTGELALA LLDSFELEQL DLDLRDRGLD GRSIRRLGSG GRTEARRIVV
RHEGRFLIYN GSGLPHVFIA DEPGCIFEAL SAALTSEQRA AMQLVGSAAA RQLREKLLAR
LPATHWDIAR MLGWPEEQAW LNPGRRMDDG RVGYPLSGRP GAAPRDERAI IRDQLRSLYP
GLDEAALDVE LARVQQGPQP VFERLVELQE AHDQLVLYLN RWVGAELQEG RRAARRLTAD
SILRAWRLQG EPVSAGEGQT QGQRLSMSGL SLRTLPALPP HIDFHRITLL SVNDTLITDI
PADFLRPFTA LTHLNLNNNA LMRLPTGIAH LPNLQSLRLA HNEIRLDAQA ISVLHGLSNL
VHLDLSHNRL EALDMSFHQL SRLTSLNLRH CRLGSWPRRL ELCGLLERAD LRNNQLREVP
TEIQLMPYAF RQAILMEDNP LSVMQQRRLY ALDVIEEHRH SPEQLGSVDL ARARTRWVGH
TDATVQAERE AVWLRLLEQA GSSGLFRLLA RLEMTADYSQ AGEGRDALVD GVWTLLATLD
GDPVLCRRIF ERAGLPLSCL DAVASHFSAL QVLVRQAQAE AAAVNPERRG ELLELGRQLF
RLDQLEGIAY QDGRQRLAAS EHVDQLALGL AYRVQLRSRL RLPNQPYAMR YPDAVALTQA
QVEDAFLRVT RAQTIEGLTD SLSQRAFWRR YLRQQHDQMF DALSADYTRR TLELQAQRPV
LAPAAFEQQL RRLQEQQDLD IERLVAGLTQ SYLRAAERAE G
|
|---|
| |